Query= MSMg01no368_a22.b1 MSMg01no368_a22.b1 CHROMAT_FILE:
MSMg01no368_a22.b1 PHD_FILE: MSMg01no368_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:24 2005
(490 letters)
>mm_chr15_18409410_18410299
Length = 890
Score = 774 bits (400), Expect = 0.0
Identities = 464/495 (93%), Gaps = 21/495 (4%)
Strand = Plus / Minus
Query: 5 gaattccatgaacgctaaatctgaaattttatgtaagactgagcacagccgtgctttgct 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 805 gaattccatgaacgctaaatctgaaattttatgaaagactgagcacagccgtgctttgct 746
Query: 65 gattattaacattttttgacaaaaaatatgtttttacttaga---agcattcagcatgtc 121
|||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct: 745 gattattaacattttttgac-aaaaatatgtttttacttagaaatattattcagcatgtc 687
Query: 122 aacatagcagcaacaattttttttgttgacttctgcaatcacacagtggtaacagtaaca 181
|||| ||||||||||| |||||||| |||||| || |||||||||||||||||
Sbjct: 686 aacagagcagcaacaa-tttttttgatgacttttg--------cagtggtaacagtaaca 636
Query: 182 acaattatctttgtgtaagctccatcacagacatctgaagatgaaaataatcaaacaaca 241
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 acgattatctttgtgtaagctccatcacagacatctgaagatgaaaataatcaaacaaca 576
Query: 242 aaaataccaccaccagcagcaataacaataacaaagaaatgaaactactatccccacata 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aaaataccaccaccagcagcaataacaataacaaagaaatgaaactactatccccacata 516
Query: 302 taaataatttgtgctgtgcaccaccaggaacatgtagtcatttctgtgtcaatttacagc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 taaataatttgtgctgtgcaccaccaggaacatgtagtcatttctgtgtcaatttacagc 456
Query: 362 ccccagactgtaccaggaaaagttactggataaggaaaatactaccagacagggctatat 421
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ccccagactgtaccaggcaaagttactggataaggaaaatactaccagacagggctatat 396
Query: 422 aaagacacatccactagtgtgttaactatacaaaanaaaaaa----aaatcaaaaaccaa 477
||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct: 395 aaagacacatccactagtgtgttaactatacaaaaaaaaaaacaaaaaa--aaaaaccac 338
Query: 478 aaa--aaaaaaaaca 490
||| ||||||||||
Sbjct: 337 aaaccaaaaaaaaca 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_a22.g1 MSMg01no368_a22.g1 CHROMAT_FILE:
MSMg01no368_a22.g1 PHD_FILE: MSMg01no368_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:24 2005
(449 letters)
>mm_chr15_18343674_18344522
Length = 849
Score = 806 bits (417), Expect = 0.0
Identities = 441/449 (98%)
Strand = Plus / Plus
Query: 1 attttgaatcaggagatgattgtaatcctgtgaattttgtaggtgccatgcagaatttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgaatcaggagatgattgtaatcctgtgaattttgtaggtgccatgcagaatttac 260
Query: 61 aagactgaaagaactgtctactgaaagctcattaatttaactgttggcccccagttataa 120
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagactgaaagaactgtctcctgtaagctcattaatttaactgttggcccccagttataa 320
Query: 121 ttactgtttagagagattagtgaacttttatgtgctccagccctgataaacaaagtgtat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ttactgtttagagagattagtgaacttttatgtgctccagccctgataaacaaattgtat 380
Query: 181 cactagtgttgaacctcaaggtcttgatgtctcacctctcatagtgagagatttagattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactagtgttgaacctcaaggtcttgatgtctcacctctcatagtgagagatttagattc 440
Query: 241 tttaaaaacacaaaattgctataggaacatgtttttgttttaattccaggtatggaatat 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaaaacacaaaattgccataggaacatgtttttgttttaattccaggtatggaatat 500
Query: 301 catattgcttcagattgtctacagcagctgacttgtgctctaacaggggtgtgattttcc 360
|| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagattgcttcagattatccacagcagctgacttgtgctctaacaggggtgtgattttcc 560
Query: 361 cagctgctgctaatctctgcaaatgtaagatgtttagaattcagggaatgcttgaaaagg 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 cagctgctgctaatctctgcaaatgtaagatgtttagaattcagggaatgattgaaaagg 620
Query: 421 tataaatactagaatcattactgctgttg 449
|||||||||||||||||||||||||||||
Sbjct: 621 tataaatactagaatcattactgctgttg 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
