BAC Information

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BAC

Clone NameMSMg01-370D01
Chromosome15 (Build37)
Map Location 20,168,898 - 20,169,395
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370D01.T7 (MSMg01no370_d01.b1)MSMg01-370D01.TJ (MSMg01no370_d01.g1)
ACCAG476996AG476997
length1,465738
length of high quality
(start - end)
---494 (74 - 567)
definitionCHROMAT_FILE: MSMg01no370_d01.b1 PHD_FILE: MSMg01no370_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:09 2005CHROMAT_FILE: MSMg01no370_d01.g1 PHD_FILE: MSMg01no370_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTCTCTCCCGGTCGCGCGAAATCACGCCGCCGCTCTCGCGGATATCGAG
TATGCCCTTTTTTCGGCCCGGTTCCGCCCACACTACTTGCCACTTGAGTC
TTATAGCTTTTGATCGCCGCCCTGGTAGGCATCTGGGCGTTTAGATAGGT
ATTGCACACCCATGGCTTACGGGTGACATGTGCGTTGCGCGAACTTGTGC
GAGCAAATATTCGCATAGCGATGTCGCACGGTTATTTCCTCTTTATCCGC
CATCAGCGGCTTTTCGGTCGCCTTTGTCGGGGTTGGCAGGACATTATGTG
AGGTAGTAGTATGCCGGCCGCATGTATTCACCGTAGCTATGAGCGCGCTT
GATCGCCCACCGACGAGCCAACCTCGTGTTATCAGGATCATATACGTCCC
GCGGAGAAGTCCGTACGTGAGGCGCTCTCGCGTCGCGTGTCAATCGATAT
TAACCCGTGCATATTCATGGAAAGATCCCTTCGTGGTTAAGGGTGCGGCG
TGTGGAGGACATATGGCCAACAACGGGAGGGTTGGTGTTTGCCCCAAACG
AGGGGAGACTATCTCGGAGTGGCAGAGCCGAAGCTCGGGGCGTTGGAACG
TACAGTTCGGGTGGGTGTATATGAGGGAGGGGGGCGGTACGAAACGACGA
GGGTAGATGAGTCGGAGGACGGAGGACGCACGCACGCGTCTGTGTGAACA
ACTGCCAGCGTGTTTATGCACAAGATCTGTCCTCATAAGAGACGTTGGCG
GAGAGAGGCGTGCGCGCGCGGAGGCGAGGACGGAGCGGTTCGAGGAGCGT
TCGGGTCGGGTACGCCGCGCGCGGGCGATTCGTTGACATGTGGCGCGCGA
CACACGCAGGTTATTGTCACGCGGTAGATAGTCTCGACGCGTGCGACATG
GTGACTGANTATNACGACGGTGCGGCAATGAGTACAGGTGTTGTGCTGAG
CGAACACGCCTCCTCGGGTGAGTCGTCGCGAGGCCGCACATCGGCGATAG
TAGCTCTGCGCCGTTGCGAGCAGTTCTGTGTATGGACGATGAGTTAATAT
CGCTCTATCTGTGTGATACACGCGCGAGATGTATAGAATACAGCGTGGAT
GAATGATACGCAATGTNGCATTGATTGTAGCGAGATTAGACGCGCGTGAC
GAATTTGTGTGCGCGGTGTGTCTCCGAAATCTACAGTGGGAGAGACTGAT
ACGCCGTNCAGTAGCGGGTAGTGGGATAGATCCCACACACATCCGTATTG
CAGGACGACGGGTGCGCTTACACANTATATATTGCTACACCTCTATCTTA
CTACGACGAGCTACGTAGCAGANACNATGTGTGCTTTAGTAGGTGCGAGT
CGCGGTGCGGACGCTGTGCAGGAGCGCTTTTGCGTGGATGCTCACTCGTA
TGTTGCCAGACGCCGTATTGTACTAGATGAAGACCGCGTAGTATCACGCT
GTCACCTCGCTACCN
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAAGTGAACTATTAAAGAACATGCAT
TTAAATTCTTTGCCTTGTAGCAAAACCCCTTGACAGTTCATTGTTGCACA
TCTGGGTAAGTTCATTTGGACACTTAAGGGTGTAAGTTTGTCCATGTGCA
TCGGTTCTACTTTGAGACAACAATTATGCAGATATTTCTCATAGTCTGCT
CAACAGCTCTTAGGATGCCAGGCACCTTGTCGGTATGTACACTGTGTCCC
TTCACTGTGGCAGCCTGGCAGCTTTTGAACGCTGTTATGCAGGTGCTCTC
CTTTGGCAGACATGTTCAGATAACAGAGCAATTCAGTCAAAACAGCAGCG
AGACTCCCTGACAGAGCATTTGCTCCTTTGGAAACATGTGCACTTACCAT
ATGGCAGGGGCATCTTAGGCTATGAAGCAGTGTTTACTCAGAATTTCAGA
CTTGAAAAGTAGGTTGGACTTGTTGTGGTGAAAAGGCACATTTGCAAGCA
ACTTATAAGGTCATTGTACAATTAAGACAAAGAGAAGTTTGGATTTCAAT
CTCATCTGCCTAAAAACATGGCTATAGGTCTTACTAAAATGTCGATCCAT
TTAAATAATTTGTAAAATAATATTATATTCTACCCTGTTTGTCTTGAATG
TCCATATTTTTGAGTCCTATGGTCCAACTTAGCATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_d01.g1 MSMg01no370_d01.g1 CHROMAT_FILE:
MSMg01no370_d01.g1 PHD_FILE: MSMg01no370_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:09 2005
         (494 letters)



>mm_chr15_20168698_20169595
          Length = 898

 Score =  913 bits (472), Expect = 0.0
 Identities = 490/498 (98%), Gaps = 4/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagtgaactattaaagaacatgcatttaaattctttgccttgtagcaaaaccccttga 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 698 aaaagtgaactattaaagaacatgcatttcaattctttgccttgtagcaaaaccccttga 639

                                                                       
Query: 61  cagttcattgttgcacatctgggtaagttcatttggacacttaagggtgtaagtttgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cagttcattgttgcacatctgggtaagttcatttggacacttaagggtgtaagtttgtcc 579

                                                                       
Query: 121 atgtgcatcggttctactttgagacaacaattatgcagatatttctcatagtctgctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atgtgcatcggttctactttgagacaacaattatgcagatatttctcatagtctgctcaa 519

                                                                       
Query: 181 cagctcttaggatgccaggcaccttgtcggtatgtacactgtgtcccttcactgtggcag 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 518 cagctcttaggatgccaggcaccttgtcggtatgtacactgtatcccttcactgtggcag 459

                                                                       
Query: 241 cctggcagcttttgaacgctgttatgcaggtgctctcctttggcagacatgttcagataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cctggcagcttttgaacgctgttatgcaggtgctctcctttggcagacatgttcagataa 399

                                                                       
Query: 301 cagagcaattcagtcaaaacagcagcgagactccctgacagag----catttgctccttt 356
           |||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||
Sbjct: 398 cagagcaattcagtcaaaacagcagcaagactccctgacagagagagcatttgctccttt 339

                                                                       
Query: 357 ggaaacatgtgcacttaccatatggcaggggcatcttaggctatgaagcagtgtttactc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggaaacatgtgcacttaccatatggcaggggcatcttaggctatgaagcagtgtttactc 279

                                                                       
Query: 417 agaatttcagacttgaaaagtaggttggacttgttgtggtgaaaaggcacatttgcaagc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 278 agaatttcagacttgaaaagtaggttggacttgttgtggtgaaaaggcacatttgcaggc 219

                             
Query: 477 aacttataaggtcattgt 494
           ||||||||||||||||||
Sbjct: 218 aacttataaggtcattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 898
Length adjustment: 10
Effective length of query: 484
Effective length of database: 888
Effective search space:   429792
Effective search space used:   429792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)