BAC Information

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BAC

Clone NameMSMg01-370J14
Chromosome15 (Build37)
Map Location 50,998,793 - 50,999,109
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370J14.T7 (MSMg01no370_j14.b1)MSMg01-370J14.TJ (MSMg01no370_j14.g1)
ACCAG477308AG477309
length775814
length of high quality
(start - end)
433 (37 - 469)317 (68 - 384)
definitionCHROMAT_FILE: MSMg01no370_j14.b1 PHD_FILE: MSMg01no370_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:42 2005CHROMAT_FILE: MSMg01no370_j14.g1 PHD_FILE: MSMg01no370_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAC
CTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCC
TTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTCAC
ACCAGTCAGAATGGCTAAGATCTAAAATTCAGGTGACAGCAGATGCTGGC
GAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGG
CTTGTACAACCACTATGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGA
CATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAG
AAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCA
GCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAAC
AGAGGAATGGATACAGAANATGTGGTACATCTACACAATGGAGTACTACT
CCGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCTAAATGGATGGAC
CTGGAGGGCATCATCCTGAGCGAGGGAACCCTTTCTCATAGAACTCCCCC
ACATTTTTTCCCTGACAGTGGAAATTTTTCCCCTCCTTGGTTCCCCGCAA
TAAGATATTTTTTGCTTCCCCCGGAACTTCTTACCAATAGAAACCGTCGG
CTGTCTCCATCCCCTCTTTTAATTCTGGGACATTTACCCTGTGTGTCCCA
CTTTATACCTCCCTTCCTCCTCTTG
GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAATCAGAAGAAAAGAGTTATGTAATGTTTAGA
CTATTAAAAGGAGCTCTTTAATGTGGCTTTTTAAATGCATAACAGTTAGT
ATTAAATGGTGCTTACATTCTGTTGGACAACTTTCAAAGCATGAAGTAGC
TTTATTTAAGGATGCCAGCATTGTGATACACTGAAAACTGCAAGTTTTGT
GGTTAAATTAATGGAAAATGTTTAAATATTACTCTTAAGACATGTAAAAC
TATTTCATATATATGTAAATACTCTGTTTAGTAGGAGGAATTAGAAAAAT
CTCCTGTGCCTATTGAAGGTGTGCAACACTTAGCACCTATTTTAAAAAAT
AAAACCCACCGAAAAAATTGACTTACCTATCGGAAAAACATGACACACCC
TTTCCTTTATCGTTATCTTTAACTCTTATCTTCTCTCTGACCCTATTCTT
TGTTTCCTCAACTACTCCTCCCCCCTCTCTCCTCCTCTCACATCTTTCTT
CACACTCCTTCTTCCACCCCCCTTTTAATTCTCATTTCAGTTTCCCCTCT
CTCTTCTCTCCCCTTTTCCCTTTCCCCCCCCTCTTCTCATTCCTCCCCCT
CCCCTTCTTTTTTCCCTCCCCTCATCTTCACCTTCGCCTGTTTTCTATTC
CTCTTTTCTCCCCCTTTCATCTTCCTGTTCCCTCTTCCTATCCCTTCTCT
TCCCCACTTCCCTTCACATTTTTACTTTCTTCCTATTCTATCTTCTTCTC
CTCTTTCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_j14.g1 MSMg01no370_j14.g1 CHROMAT_FILE:
MSMg01no370_j14.g1 PHD_FILE: MSMg01no370_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:42 2005
         (317 letters)



>mm_chr15_50998593_50999309
          Length = 717

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatcagaagaaaagagttatgtaatgtttagactattaaaaggagctctttaatgtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaatcagaagaaaagagttatgtaatgtttagactattaaaaggagctctttaatgtggc 458

                                                                       
Query: 61  tttttaaatgcataacagttagtattaaatggtgcttacattctgttggacaactttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tttttaaatgcataacagttagtattaaatggtgcttacattctgttggacaactttcaa 398

                                                                       
Query: 121 agcatgaagtagctttatttaaggatgccagcattgtgatacactgaaaactgcaagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 397 agcatgaagtagctttatttaaggatgccagcattgtgatacactgaaaacggcaagttt 338

                                                                       
Query: 181 tgtggttaaattaatggaaaatgtttaaatattactcttaagacatgtaaaactatttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgtggttaaattaatggaaaatgtttaaatattactcttaagacatgtaaaactatttca 278

                                                                       
Query: 241 tatatatgtaaatactctgtttagtaggaggaattagaaaaatctcctgtgcctattgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tatatatgtaaatactctgtttagtaggaggaattagaaaaatctcctgtgcctattgaa 218

                            
Query: 301 ggtgtgcaacacttagc 317
           ||||||||| |||||||
Sbjct: 217 ggtgtgcaatacttagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)