BAC Information

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BAC

Clone NameMSMg01-370O02
Chromosome15 (Build37)
Map Location 19,210,752 - 19,367,372
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666839, Cdh10, EG666857
Downstream geneEG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370O02.T7 (MSMg01no370_o02.b1)MSMg01-370O02.TJ (MSMg01no370_o02.g1)
ACCAG477521AG477522
length746754
length of high quality
(start - end)		529 (63 - 591)454 (71 - 524)
definitionCHROMAT_FILE: MSMg01no370_o02.b1 PHD_FILE: MSMg01no370_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:04 2005CHROMAT_FILE: MSMg01no370_o02.g1 PHD_FILE: MSMg01no370_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,210,752 - 19,211,279)(19,366,919 - 19,367,372)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAAGTCTATACGAGACTGTCTCAAAAAACACACAAATATTGAAATCTTA
TATTAAGTCATTTTTGTAAGTCAGGTACATACAGCAACTTTCTGTGATAT
TGGAATGTTCTGTATCTACTTAACAAATGTAGTTATCACTGGCTGTCTAA
CCCCACTGAACTGCTTCAACAGCTTAAAATTTTATATATTCGTTCATTTT
AAAGCTAAAAAGTTATATTAATCAAATGGTAATGATTATGGCTGCAAAAC
TCTAAGATAATTCACAAGTTCATGAGATTAAAAATCCCATAGGGTTAAAT
TAAACACTAATTAAAAGTATGTTATAATTATCAATATCTAGTATAACCTT
TGATGCTAGAATTTTTAATTAGAATAAAGAAAATCTTTTGATTGGGATTT
TGAACTACACAGAGTACAGCAATTAAGTGTATAGCTTTGTCAAATTTAAT
CATTTATAAATTATTATGTAAAAGTACCATGTATTGATGTGGAACCTCTT
ATAGAATAAAAAAGAAAGAATGAAAAAAAAAAGAATAGAAAAAGTATAAC
CACTCCAAAATAGTACAAGTCTTAACCAGAACACTTAAGACTATAAAGCT
TCTACCAGTAAATCAAGATAAAATTTTTGGCAATGATTTCTTGAACGTAT
TATCTGACGAATAAAGAAAATCACCCTAAGCCTCCAACTAGTTGAA

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACTGAGACTGCCTAAGAATGCAAGGAGCA
GTTATATAGCTTGGAATCTAATTTTTCTGTCCAGATCCTTTCCAGGAACC
AGCTTTCCTTGTTGAAACTCAGCAACCAAACTTTCAGGATTAAATTCTGA
CTACCCTTGCTGTTGCTGAAGCAAGAAAGGGAGAAATCTTGGGTGAAAAA
AGCATTGAAAAGCTAAAACAAAATGAACTATACCTGTCAGAAGGTTCAAA
ACTAATACCTACTAATGAGAGGTATCATTTGAGGTTTATCTAAAAGCATG
TGGACGGCATCATTTAAAGTGATTCTTTCCACTTCTATACACTTTCAATG
TGAATTTCAATTTTTCATTCTTATTAGCAGCCAAATAAAATTTCATTGTA
GGCAGATCAGCATACCTACTCCACAAACCTGGCTGTCTCCCAGGAAGTCT
GCTCTAACCTGGGGCACAGAGACCAGTAGATGTGGGTTCTGTCATGCTCT
GCCAGAGTCCTATAGCCCCTCCTTTCTGCACCTACACCTATACCTGTGGA
AGACTGGCCTGCCTGTCTCCCCATCCTATGGCCATTCCTGCTACCATGTA
AGCCTGTTCTCTACCTATAAATACTTGCTCCTCCTGTATCCTTTCTTCTA
CCCTCTTTCACCAAAACTTCTTCTCCGTCCTCCCAGTTTTCTCACTCCTA
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_o02.b1 MSMg01no370_o02.b1 CHROMAT_FILE:
MSMg01no370_o02.b1 PHD_FILE: MSMg01no370_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:04 2005
         (529 letters)



>mm_chr15_19210551_19211479
          Length = 929

 Score =  982 bits (508), Expect = 0.0
 Identities = 523/528 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   agactgtctcaaaaaacacacaaatattgaaatcttatattaagtcatttttgtaagtca 61
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agactgtctcaaaagcctcacaaatattgaaatcttatattaagtcatttttgtaagtca 261

                                                                       
Query: 62  ggtacatacagcaactttctgtgatattggaatgttctgtatctacttaacaaatgtagt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggtacatacagcaactttctgtgatattggaatgttctgtatctacttaacaaatgtagt 321

                                                                       
Query: 122 tatcactggctgtctaaccccactgaactgcttcaacagcttaaaattttatatattcgt 181
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 322 tatcactggctttctaaccccactgaactgcttcaacagcttaaagttttatatattcgt 381

                                                                       
Query: 182 tcattttaaagctaaaaagttatattaatcaaatggtaatgattatggctgcaaaactct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcattttaaagctaaaaagttatattaatcaaatggtaatgattatggctgcaaaactct 441

                                                                       
Query: 242 aagataattcacaagttcatgagattaaaaatcccatagggttaaattaaacactaatta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aagataattcacaagttcatgagattaaaaatcccatagggttaaattaaacactaatta 501

                                                                       
Query: 302 aaagtatgttataattatcaatatctagtataacctttgatgctagaatttttaattaga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaagtatgttataattatcaatatctagtataacctttgatgctagaatttttaattaga 561

                                                                       
Query: 362 ataaagaaaatcttttgattgggattttgaactacacagagtacagcaattaagtgtata 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ataaagaaaatcttttgattgggattttgaactacacagagtacagcaattaagtgtata 621

                                                                       
Query: 422 gctttgtcaaatttaatcatttataaattattatgtaaaagtaccatgtattgatgtgga 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gctttgtcaaatttaatcatttataaattattatgtaaaagtaccatgtattgatgtgga 681

                                                           
Query: 482 acctcttatagaataaaaaagaaagaatgaaaaaaaaaagaatagaaa 529
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acctcttatagaataaaaaagaaagaatgaaaaaaaaaagaatagaaa 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_o02.g1 MSMg01no370_o02.g1 CHROMAT_FILE:
MSMg01no370_o02.g1 PHD_FILE: MSMg01no370_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:04 2005
         (454 letters)



>mm_chr15_19366719_19367572
          Length = 854

 Score =  855 bits (442), Expect = 0.0
 Identities = 451/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgagactgcctaagaatgcaaggagcagttatatagcttggaatctaatttttctgt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aactgagactggctaagaatgcaaggagcagttatatagcttggaatctaatttttctgt 595

                                                                       
Query: 61  ccagatcctttccaggaaccagctttccttgttgaaactcagcaaccaaactttcaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ccagatcctttccaggaaccagctttccttgttgaaactcagcaaccaaactttcaggat 535

                                                                       
Query: 121 taaattctgactacccttgctgttgctgaagcaagaaagggagaaatcttgggtgaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 taaattctgactacccttgctgttgctgaagcaagaaagggagaaatcttgggtgaaaaa 475

                                                                       
Query: 181 agcattgaaaagctaaaacaaaatgaactatacctgtcagaaggttcaaaactaatacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 474 agcattgaaaagctaaaacaaaatgaactatacctgtcagaaggttcaaaactaataccc 415

                                                                       
Query: 241 actaatgagaggtatcatttgaggtttatctaaaagcatgtggacggcatcatttaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 actaatgagaggtatcatttgaggtttatctaaaagcatgtggacggcatcatttaaagt 355

                                                                       
Query: 301 gattctttccacttctatacactttcaatgtgaatttcaatttttcattcttattagcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gattctttccacttctatacactttcaatgtgaatttcaatttttcattcttattagcag 295

                                                                       
Query: 361 ccaaataaaatttcattgtaggcagatcagcatacctactccacaaacctggctgtctcc 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 294 ccaaataaaatttcattgtaggcagatcagcatgcctactccacaaacctggctgtctcc 235

                                             
Query: 421 caggaagtctgctctaacctggggcacagagacc 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 caggaagtctgctctaacctggggcacagagacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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