BAC Information

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BAC

Clone NameMSMg01-373F06
Chromosome15 (Build37)
Map Location 27,080,515 - 27,254,967
singlet/doubletdoublet
Overlap genenone
Upstream geneAK162044, Fbxl7, LOC622531, LOC625311
Downstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126, Dnahc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373F06.T7 (MSMg01no373_f06.b1)MSMg01-373F06.TJ (MSMg01no373_f06.g1)
ACCAG479384AG479385
length724744
length of high quality
(start - end)		571 (19 - 589)333 (58 - 390)
definitionCHROMAT_FILE: MSMg01no373_f06.b1 PHD_FILE: MSMg01no373_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:16 2005CHROMAT_FILE: MSMg01no373_f06.g1 PHD_FILE: MSMg01no373_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,080,515 - 27,081,079)(27,254,635 - 27,254,967)
sequence
CTCACTATTTGGAGAGGATCCGCGGAATTCTTTAGAAAGCATGAATAGAC
AGCTAGCTTCCTCCAACCCAAAAGCTAAGGATGTTGTCAGGTAGCATCTA
GTGTCTATAGCAGAGAGTCCCCTGCTTTGCTCGCCCCACCTACCTACCTG
ATGCACCTACCAATGTACCTTAAATGTGCTCAATTAATGACTTTCTTTGT
TCTGTGGTAGGAAGCAAATAAAGTCATGAGTGAGTGTGTATGTTTCACAT
GAGCATGTCTACATCAAGGACTAATGCCTTAGATACATGGAAGGGGCAAT
GCCTTCCCCAGATGAGACTCAGAGGGGATGGCAAAGCCTTCTTCTCATCC
AAGTGTGCCATGACAGTGCATGCAGCAAAGGTCAACCATAGCTTTCCCCT
GATGAATGTTCATGGCCAGGAGATTGTTCTCTTACAGAGACAGCTCCTAC
CAAGATTAGCTAAACCCACCTTCTTGTTTCCTGCATGTAATAATCCCACC
ACCTTGTTTGTATGTAATAACCCTGCCTCCAGCTACATGCAAACCCTCCA
TGTTTAACTATTTATAATAAACATGTTGAGCTTCTGGGGTGCTGCAACTT
TCTTTACCTGGAGCAATGGTGATGCACCATTGCTATAACGACTTTATAAA
ACTGTGACCACATATGAAAATGAAATTTGGGATATCCCTAACCCATGAAC
CCGAAGAATGCTCCCTTAATTAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGCCTTCTATCCACCTGGAGTTCTTGTCCTGCCTAGGACAATG
TGTGGAATGTGCCCCTCCATAATCCTATCTTCCTTCCCACTGTTGGTGCT
CATAGCAGGACCAAAGCTGGCAGATGCAGAAGTTGTCCTTGGCGCCGTCC
GTGGGTGATCCTGCTCTTGTGCTCTTTGGTCTCTTTGGTGTTCATGATGA
ATGTGAGGATAGGAAGGTGCAAGAAGGAGATTCTTGTTACAGAGTCCTTC
TCTGAGGCCTCCAGGGCACAAAGGGCTTTTATGAGAAGGGACAGAGGGAG
GATATGGAGATATTGGTTAGGAGGCAGAGGCCTTTGTTATTTAGTCTGCT
GCCTCTTTTCTTTTTTCTCTGTTNCAACACAACAGATTCATGGGCCTCCT
GCACCTATTTATTTTAAGACTATGGACCGAGTACAGTCTATATAGTGTGC
TCTTGTTAATCTCTATCATGTCTTACCCAGTTTTTTCCTCTTCTATTTTA
GTAGTACTTCTCAAAATTTATATTGTTTAAAGCATGCCATGTCCCTTAAT
TATCACCCTCTTCTTCCAACCATACCCTCTTTTCTCTCTTTTCTCCTTCC
CTTACTTTTTTCATCTTTTTTCTCCTCCTCCGTTTCCCTTTACTCTTAAT
ATTTTAGTTATTAACCCTATTGTTTTTTTTTTTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_f06.b1 MSMg01no373_f06.b1 CHROMAT_FILE:
MSMg01no373_f06.b1 PHD_FILE: MSMg01no373_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:16 2005
         (571 letters)



>mm_chr15_27080309_27081279
          Length = 971

 Score = 1031 bits (533), Expect = 0.0
 Identities = 557/565 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctttagaaagcatgaatagacagctagcttcctccaacccaaaagctaaggatgt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctttagaaagcatgaatagacagctagcttcctccaacccaaaagctaaggatgt 266

                                                                       
Query: 67  tgtcaggtagcatctagtgtctatagcagagagtcccctgctttgctcgccccacctacc 126
           || ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 267 tgccaggtagcatctaatgtctatagcagagagtcccctgctctgctcgccccacctacc 326

                                                                       
Query: 127 tacctgatgcacctaccaatgtaccttaaatgtgctcaattaatgactttctttgttctg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tacctgatgcacctaccaatgtaccttaaatgtgctcaattaatgactttctttgttctg 386

                                                                       
Query: 187 tggtaggaagcaaataaagtcatgagtgagtgtgtatgtttcacatgagcatgtctacat 246
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tggtaggaaacaaataaagtcatgagtgagtgtgtatgtttcacatgagcatgtctacat 446

                                                                       
Query: 247 caaggactaatgccttagatacatggaaggggcaatgccttccccagatgagactcagag 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caaggactaatgccttagatacatggaaggggcaatgccttccccagatgagactcagag 506

                                                                       
Query: 307 gggatggcaaagccttcttctcatccaagtgtgccatgacagtgcatgcagcaaaggtca 366
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 507 gggatagcaaagccttcttctcatccaagtgtgccatgacagtgcatgcagcaaaggtta 566

                                                                       
Query: 367 accatagctttcccctgatgaatgttcatggccaggagattgttctcttacagagacagc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 accatagctttcccctgatgaatgttcatggccaggagattgttctcttacagagacagc 626

                                                                       
Query: 427 tcctaccaagattagctaaacccaccttcttgtttcctgcatgtaataatcccaccacct 486
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcctaccaagattagctaaaccctccttcttgtttcctgcatgtaataatcccaccacct 686

                                                                       
Query: 487 tgtttgtatgtaataaccctgcctccagctacatgcaaaccctccatgtttaactattta 546
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 687 tgtttgtatgtaataaccctgcctccagctacatgcaaaccccccatgtttaactattta 746

                                    
Query: 547 taataaacatgttgagcttctgggg 571
           |||||||||||||||||||||||||
Sbjct: 747 taataaacatgttgagcttctgggg 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_f06.g1 MSMg01no373_f06.g1 CHROMAT_FILE:
MSMg01no373_f06.g1 PHD_FILE: MSMg01no373_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:16 2005
         (333 letters)



>mm_chr15_27254435_27255167
          Length = 733

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccttctatccacctggagttcttgtcctgcctaggacaatgtgtggaatgtgcccctc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 533 agccttctatccacctggagttcttgtcccgcctaggacaatgtgtggaatgtgcccctc 474

                                                                       
Query: 61  cataatcctatcttccttcccactgttggtgctcatagcaggaccaaagctggcagatgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 473 cataatcctatcttccttcccactgttggtgctcatagcaggaccaaagctggcaggtgc 414

                                                                       
Query: 121 agaagttgtccttggcgccgtccgtgggtgatcctgctcttgtgctctttggtctctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agaagttgtccttggcgccgtccgtgggtgatcctgctcttgtgctctttggtctctttg 354

                                                                       
Query: 181 gtgttcatgatgaatgtgaggataggaaggtgcaagaaggagattcttgttacagagtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gtgttcatgatgaatgtgaggataggaaggtgcaagaaggagattcttgttacagagtcc 294

                                                                       
Query: 241 ttctctgaggcctccagggcacaaagggcttttatgagaagggacagagggaggatatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttctctgaggcctccagggcacaaagggcttttatgagaagggacagagggaggatatgg 234

                                            
Query: 301 agatattggttaggaggcagaggcctttgttat 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 agatattggttaggaggcagaggcctttgttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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