BAC Information

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BAC

Clone NameMSMg01-373O24
Chromosome15 (Build37)
Map Location 36,777,312 - 36,966,778
singlet/doubletdoublet
Overlap geneZfp706
Upstream geneVps13b, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz
Downstream geneLOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373O24.T7 (MSMg01no373_o24.b1)MSMg01-373O24.TJ (MSMg01no373_o24.g1)
ACCAG479850AG479851
length729717
length of high quality
(start - end)		531 (36 - 566)494 (60 - 553)
definitionCHROMAT_FILE: MSMg01no373_o24.b1 PHD_FILE: MSMg01no373_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:00 2005CHROMAT_FILE: MSMg01no373_o24.g1 PHD_FILE: MSMg01no373_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,777,312 - 36,777,821)(36,966,328 - 36,966,778)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGA
ATTTCCTATCTGGGCAGCATCAGGTGTTCCAGGCACTAAAAGCATAGCAG
CAGGATGTTCTCGAGGTGTGGAAAGGAAGGCATGGTATTGACCTTCAGTG
CCCAAGGCTTGAATTGGGACTGAGGATGGTAGGAATCACTGGTACCCTAG
AACAGTCTAGTCAGAGGAGAGGTGAAGTCTGGTGAGAGAGTGTTGCTGGC
CCGACCCTGCTGAAACGTGGCTTGGCTTCCTCCCGCTTCTAACAGTCTGG
CTTCTATCACACGAACACAAGAGAAAAATACCTTGGGAAGATGGATAACA
TTTAAGTGACTCTGGCAAGTTTTGTGGCCACAGGACCTGTTTCAAGAATT
ATTTTTAACTGTAGACATTAGGTCCCAATGGGAATAAAACTTAAAAGGAC
ATTTATAATTAGGTCACATTTGGAGAAACTTATTACATTTTGCAGGATGT
TCCAGGAGTCGGATATCTTAAGTGATCTTAAGATTTACAAGAATTCTATT
TTTCTATGACTAATTAAAAGTAAACAAGAAAAAATATGGCAGCAATATAA
GATCAAAGGAATCCAGGAACAGCTCTAAAAAAAGAAATGTCCGAAAACTC
ATGTCCACAGCGCCCTCCTTTTTCCTTGGGCACCTCCTAACCCAAGGGAA
CCTGGAAAAGGGAGAATTCTTCTTAATGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAAATGGCATCAGCTGACTAGAAATGTGTGCCAAATGCCTG
TCAATTACAGGCTGAAATAGGAGGCAAGGCTATGGGTGGAAAAGCATCCC
AGATACAGCGACGATCTGGAGCAGGGCTTGCTTAGATGACAGGAAACAGT
TCCGCATGGAGGAAACAGAGCTTGTGTGAGAGAGGAAAGACAGAGCAGGA
AGGCTCCACATTCCTCTTTCAGGGCTCTCTGCTTTGCTTTGTCTTAGGTT
TTTTTGATTATCTTTGGTGGTATCAGGATCACACATAAGACTTCCTATGT
GCCAAGCTAGTGCTCTACCACTGGGCTGCATTCCAGTCCTTGTTTGAAGG
TGCTGAACTCCGTACATTTGGTATTGCTCTTTAGAATCATGGCAGAAGCC
TGCCGCTTATGCATTTGCTTCTGCCCGTGGTAACACTGCCCACAGTGACA
TTATTATTCTTCTGCTCCTGGTTTAGCTCATTTGTGCTTTTGTGCAGCAG
GGAGCTGGGGGGGGGACTGTGTGGGATCTGTGTAACTTGGNNTCCTTCTT
CTCCCTTGCTTGGTGCCTCGCTGCCCTCCTTATTCTTTTCTCTTTTCTTC
CTTTCCCCACGTTCTCCCCCTGTAAGAATGTCTGCCCTTTTGATCTCCTT
ATTTCTCTCTACCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_o24.b1 MSMg01no373_o24.b1 CHROMAT_FILE:
MSMg01no373_o24.b1 PHD_FILE: MSMg01no373_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:00 2005
         (531 letters)



>mm_chr15_36777091_36778021
          Length = 931

 Score =  978 bits (506), Expect = 0.0
 Identities = 509/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 22  tatctgggcagcatcaggtgttccaggcactaaaagcatagcagcaggatgttctcgagg 81
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 222 tatctgggcagcatcaggtgttccaggcactaaaagcatagcagcaggacgttctcgagg 281

                                                                       
Query: 82  tgtggaaaggaaggcatggtattgaccttcagtgcccaaggcttgaattgggactgagga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgtggaaaggaaggcatggtattgaccttcagtgcccaaggcttgaattgggactgagga 341

                                                                       
Query: 142 tggtaggaatcactggtaccctagaacagtctagtcagaggagaggtgaagtctggtgag 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tggtaggaatcactggtaccctagaacagtctagtcagaggagaggtgaagtctggtgag 401

                                                                       
Query: 202 agagtgttgctggcccgaccctgctgaaacgtggcttggcttcctcccgcttctaacagt 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agagtgttgctggcccgaccctgctgaaacgtggcttggcttcctcccgcttctaacagt 461

                                                                       
Query: 262 ctggcttctatcacacgaacacaagagaaaaataccttgggaagatggataacatttaag 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctggcttctatcacacgaacacaagagaaaaataccttgggaagatggataacatttaag 521

                                                                       
Query: 322 tgactctggcaagttttgtggccacaggacctgtttcaagaattatttttaactgtagac 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgactctggcaagttttgtggccacaggacctgtttcaagaattatttttaactgtagac 581

                                                                       
Query: 382 attaggtcccaatgggaataaaacttaaaaggacatttataattaggtcacatttggaga 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 attaggtcccaatgggaataaaacttaaaaggacatttataattaggtcacatttggaga 641

                                                                       
Query: 442 aacttattacattttgcaggatgttccaggagtcggatatcttaagtgatcttaagattt 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aacttattacattttgcaggatgttccaggagtcggatatcttaagtgatcttaagattt 701

                                         
Query: 502 acaagaattctatttttctatgactaatta 531
           ||||||||||||||||||||||||||||||
Sbjct: 702 acaagaattctatttttctatgactaatta 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_o24.g1 MSMg01no373_o24.g1 CHROMAT_FILE:
MSMg01no373_o24.g1 PHD_FILE: MSMg01no373_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:00 2005
         (494 letters)



>mm_chr15_36966328_36967221
          Length = 894

 Score =  864 bits (447), Expect = 0.0
 Identities = 450/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatggcatcagctgactagaaatgtgtgccaaatgcctgtcaattacaggctgaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 caaatggcatcagctgactagaaatgtgtgccaaatgcctgtcaattacaggctgaaata 392

                                                                       
Query: 61  ggaggcaaggctatgggtggaaaagcatcccagatacagcgacgatctggagcagggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggaggcaaggctatgggtggaaaagcatcccagatacagcgacgatctggagcagggctt 332

                                                                       
Query: 121 gcttagatgacaggaaacagttccgcatggaggaaacagagcttgtgtgagagaggaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gcttagatgacaggaaacagttccgcatggaggaaacagagcttgtgtgagagaggaaag 272

                                                                       
Query: 181 acagagcaggaaggctccacattcctctttcagggctctctgctttgctttgtcttaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 acagagcaggaaggctccacattcctctttcagggctctctgctttgctttgtcttaggt 212

                                                                       
Query: 241 ttttttgattatctttggtggtatcaggatcacacataagacttcctatgtgccaagcta 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ttttttaattatctttggtggtatcaggatcacacataagacttcctatgtgccaagcta 152

                                                                       
Query: 301 gtgctctaccactgggctgcattccagtccttgtttgaaggtgctgaactccgtacattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gtgctctaccactgggctgcattccagtccttgtttgaaggtgctgaactccgtacattt 92

                                                                       
Query: 361 ggtattgctctttagaatcatggcagaagcctgccgcttatgcatttgcttctgcccgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  ggtattgctctttagaatcatggcagaagcctgccgcttatgcatttgcttctgcccgtg 32

                                          
Query: 421 gtaacactgcccacagtgacattattattct 451
           |||||||||||||||||||||||||||||||
Sbjct: 31  gtaacactgcccacagtgacattattattct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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