BAC Information

Click to search

BAC

Clone NameMSMg01-374H03
Chromosome15 (Build37)
Map Location 102,642,301 - 102,642,580
singlet/doubletsinglet
Overlap geneLOC100043050
Upstream geneKrt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762
Downstream geneHoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374H03.T7 (MSMg01no374_h03.b1)MSMg01-374H03.TJ (MSMg01no374_h03.g1)
ACCAG480240AG480241
length807830
length of high quality
(start - end)		508 (43 - 550)280 (56 - 335)
definitionCHROMAT_FILE: MSMg01no374_h03.b1 PHD_FILE: MSMg01no374_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:41 2005CHROMAT_FILE: MSMg01no374_h03.g1 PHD_FILE: MSMg01no374_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCCATGATATAGCACTTTATAAGTGTTTAGATATAAATCAACCTCCTC
TTTTCTGAGAATCTATTTGGGGAAGATAAGTTTTCACCTGATATTTAAGC
ACCACATGGAAAGTGAAAAATATTTCACAATCCAGGAGGTGGCTCAGAGG
GTAAAGATTTTTTTTTCAAGACAGGGTTTTTGTGTAGCCCTGACTGTCCT
GAACTCATTCTGTAGACTAGGCTGGTCTTAGACTCACAGAGATCCTCCTG
TCTCTGCCTTCAGAGTGCTGGGTATAAAAGTGTGTCACTACCATCCAAGT
GGTAAAGACTCTTGTAGGTAAACCTGATGGTCAGAATTCAATCCCCAGAA
CCCACACTGCAGAAGGAAAGAACTGAATCCTGCCTCTTGTCCTTTGATTG
CTACACATGTACTGTCACACATGGACATACACACAAGTAAATGTCAAATT
AAGAAGGGAGTGTTTAACATTAGTCTTTTCTTATCTCTCTTCTGACTCTT
TAGGGACTTACTCCTCCTCCCTCCCAACCCTTAAAAATACCCTAAGTTAT
TCCACTGCCTTATAACAAAGCACTTCTGTCCCTGTTCAAGGTAAAGGGAT
CCAGCCCGCCAATGGTTCTTAACTCTTTTCTAAGTCACAGGGGAGGGTAA
TTTATACATCCCCACCAAATTCTGCTGTACTTTTTCTCCTGATCCTCCTT
CTTGGTTTTCCCTTTGTGTCCCCCTCTTCAATACCCTCCACGCGACTAAT
ATACCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGATGTTGTATCAGTAAAATTCCTTTTAACATCTGCCATCCTGCC
TCCCCAGGTAGCTCTGCAGAGGTTAGGTGTATTCAAGAGTGCTCATGCAG
CAGGGTCAACTGATCCCAAAGGTTATGGAATGACAGAAACCTGAAGGGAT
GTAAGAGTCACGGGAAGAAGAGGAAGGGTTCTACCAAAGTTACTCAGGGG
TAAGCTAAGTCTGTGGAAGAGTTATGATAATACATGTCACCCCATAGCAG
CTTTAGATGAAGAGGTGTTTTTTTGGTTTGTTTGCTAGTTTTATTTTTTG
AGACTGTCATCTTCTTCATACTTCTGTATGCCTCGTACTTCGCTTATGTT
TCCTATCTTGTTTTTTTCCCTCCTTTCTTCTTTTTTTTTTCTTGCCCCCT
TTAGTGTTGTCTTCTTTCGTTCTTTCTCTCCTTTTTTTCTGCCAAACTTC
CTCTCTTCATCTCTTTTTTCTTATTTCTCTGATCTTCTCCACTTTTCTGT
TTATTCTTTTTTTCCCCTCCTTCTTTTTCCCCCTTCTTTTTTTTCTTCTC
TTTTTTCTCCGTTTCTCCTCTCTTATTCTATACTCCTCTTTTCCCCTTTT
TTCTCTTCATTTATTTTCTTCTTTTATCATACTCCTCTCTCTCTATTCCT
CACTATTCCTATTTCTATCCTTCCCTTTTTTTCACAATTTCCTCTTATAC
ACCACTTTTTATTCTTACTCCTTTCTTTTTCCCTTTCTTGTTTATTCTAT
ACTCATTATCTATTTTACTTATTACCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_h03.g1 MSMg01no374_h03.g1 CHROMAT_FILE:
MSMg01no374_h03.g1 PHD_FILE: MSMg01no374_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:41 2005
         (280 letters)



>mm_chr15_102642101_102642780
          Length = 680

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatgttgtatcagtaaaattccttttaacatctgccatcctgcctccccaggtagctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatgttgtatcagtaaaattccttttaacatctgccatcctgcctccccaggtagctct 260

                                                                       
Query: 61  gcagaggttaggtgtattcaagagtgctcatgcagcagggtcaactgatcccaaaggtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaggttaggtgtattcaagagtgctcatgcagcagggtcaactgatcccaaaggtta 320

                                                                       
Query: 121 tggaatgacagaaacctgaagggatgtaagagtcacgggaagaagaggaagggttctacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaatgacagaaacctgaagggatgtaagagtcacgggaagaagaggaagggttctacc 380

                                                                       
Query: 181 aaagttactcaggggtaagctaagtctgtggaagagttatgataatacatgtcaccccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagttactcaggggtaagctaagtctgtggaagagttatgataatacatgtcaccccat 440

                                                   
Query: 241 agcagctttagatgaagaggtgtttttttggtttgtttgc 280
           |||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 agcagctttagatgaagaggggtttttttggtttgtttgc 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |