BAC Information

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BAC

Clone NameMSMg01-374K05
Chromosome15 (Build37)
Map Location 65,139,428 - 65,139,688
singlet/doubletsinglet
Overlap genenone
Upstream geneDdef1, Adcy8, LOC268812, LOC100040790, LOC665836
Downstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374K05.T7 (MSMg01no374_k05.b1)MSMg01-374K05.TJ (MSMg01no374_k05.g1)
ACCAG480385AG480386
length801754
length of high quality
(start - end)
281 (45 - 325)502 (57 - 558)
definitionCHROMAT_FILE: MSMg01no374_k05.b1 PHD_FILE: MSMg01no374_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:56 2005CHROMAT_FILE: MSMg01no374_k05.g1 PHD_FILE: MSMg01no374_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCCAAACCAATTTGCAACAGGCAAAATATGTTATTATGAGATATTT
GTTTTCTGAAACAATTGTAGTCATGAAGTCTTTCTTTTTAATCTTTCCCC
TCCTTCACTTCTTTTAGCCTGTCTTTTTGTTTTTTTTTGTTTTATTTTTG
ATTAGTTATTAGAAAGGGCAAGTTGAGAATAACATGGATTCACAGATTTT
GAAGCACAAAGATGTGGAAGTTTACATCTACAAAGCAAATCAGGAGAAAA
AGAAGGCAGGGCAATAGCTAGAAAATTATTTTCATAAACAAAAGTCCCCT
TTTATATTCCCTGTCATCATACTCTCCAGCCAAAAATAGCCATCATGCCA
GCTCCATCTGGAGAAAGAATGGTCCGTTTGCCATCTGCTGAGACAGAAAG
GCACACACAAACTGTGATTTAAAGTCATCAGAAATAGAATTAAATAACGT
ATGTCCGAATTAAGGGAATCGCTACACAATCTTTGCTGAGGCCATGGGGT
GCCTCTCTGTGGGTGTGTGTCATTCAGAGAGTAAATACTAAATCCCTTTG
ATAATCAAGATTACAAATGTGGGTGTAGCAGTTAGGTCTAATTGAATATA
ACGAATTTAGTTTGACCATCCTTATATTACCTGTATACCGTATTTGGATT
TATCACTTTTATCTTTTTTCCTTCTCTTCTCCCTTTCCTTTATCTCCCAT
CTCCCCTTTACTTTCTTTTTTTCTCCACTTCCTACTCTCTCTCTTTTTAT
T
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAATAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGGAACACATTCACAAA
AAAATCACACCAATATGTATTCCCTGACAAGTGGATATTAGCTCCAAACC
TAGGAAACCTCAGAATTAAAATAAATTTGGTTAACCCTGAAACTCTCAAA
AAAGAAAACCGAAGGCGGACCCATCCCCTTCTTAAATTGGGAAATAACAC
CAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_k05.b1 MSMg01no374_k05.b1 CHROMAT_FILE:
MSMg01no374_k05.b1 PHD_FILE: MSMg01no374_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:56 2005
         (281 letters)



>mm_chr15_65139222_65139902
          Length = 681

 Score =  435 bits (225), Expect = e-126
 Identities = 256/271 (94%), Gaps = 10/271 (3%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccaaaccaatttgcaacaggcaaaatatgttattatgagatatttgttttctgaa 66
           |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccaaaccaatttggaacaagcaaaatatgttattatgagatatttgttttctgaa 266

                                                                       
Query: 67  acaattgtagtcatgaagtctttctttttaatctttcccctccttcacttcttttagcct 126
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acaattgtagtcatgaagcctttctttttaatctttcccctccttcacttcttttagcct 326

                                                                       
Query: 127 gtctttttgtttttttttgttttatttttgattagttattagaaagggcaagttgagaat 186
           | |||||| |||||||||        ||||||||||||||||||||||||||||||||||
Sbjct: 327 gccttttt-ttttttttt--------tttgattagttattagaaagggcaagttgagaat 377

                                                                       
Query: 187 aacatggattcacagattttgaagcacaaagatgtggaagtttacatctacaaagcaaat 246
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 378 aacatggattcacagattttgaagcacaatgatgtggaagtttacatctacaaagcaaat 437

                                          
Query: 247 caggagaaaaagaaggcagggcaatagctag 277
           |||||||||||||||||||| ||||||||||
Sbjct: 438 caggagaaaaagaaggcagg-caatagctag 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)