Query= MSMg01no374_n11.b1 MSMg01no374_n11.b1 CHROMAT_FILE:
MSMg01no374_n11.b1 PHD_FILE: MSMg01no374_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:12 2005
(559 letters)
>mm_chr15_53323793_53324751
Length = 959
Score = 992 bits (513), Expect = 0.0
Identities = 543/559 (97%), Gaps = 11/559 (1%)
Strand = Plus / Plus
Query: 1 agggcgggagacaatacttagtgaaatgaccaaaatatagtgatgcattcctgctgcttg 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtgggagacaatacttagtgaaatgaccaaaatatagtgatgcattcctgctgcttg 260
Query: 61 ccttatgcttatgtaggtcataagaccactcataaaagatgttttattattagaaaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttatgcttatgtaggtcataagaccactcataaaagatgttttattattagaaaatag 320
Query: 121 taaaagtagtttgggctcgtctttttcctttattaaatgctacacatcctgaatccaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaagtagtttgggctcgtctttttcctttattaaatgctacacatcctgaatccaaat 380
Query: 181 aacgtaaccttctgtccctttcttcttttcttgtccctcctttcttccttttatcccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacgtaaccttctgtccctttcttcttttcttgtccctcctttcttccttttatcccttt 440
Query: 241 cttctttcagcaaatgttgagtgtgcatgtgtcaggtgctttactagacggacacaatta 300
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 441 cttctttcagcaaatgttgagtgtgcacgtgtaaggtgctttactagacggacacaatta 500
Query: 301 taaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaa 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaaacaaaa---aacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaa 557
Query: 361 acaaaacaaaacaaaacaacacctcacagttccccggagaacatccttcccctgaatatg 420
||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct: 558 acaaaacaaaaga--------cctcacagttccctggagaacatccttcccctgaatatg 609
Query: 421 aggattggttttctggtacctcaagaaagtcactgtgtgttaagtttatagagaatgagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aggattggttttctggtacctcaagaaagtcactgtgtgttaagtttatagagaatgagt 669
Query: 481 tccgatgctattggacaagccttgctgttagtacttctggaggctgctggtgcgaggaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tccgatgctattggacaagccttgctgttagtacttctggaggctgctggtgcgaggaaa 729
Query: 541 ggttccaggagcgatctgc 559
|||||||||||||||||||
Sbjct: 730 ggttccaggagcgatctgc 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_n11.g1 MSMg01no374_n11.g1 CHROMAT_FILE:
MSMg01no374_n11.g1 PHD_FILE: MSMg01no374_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:13 2005
(547 letters)
>mm_chr15_53464818_53465764
Length = 947
Score = 901 bits (466), Expect = 0.0
Identities = 536/586 (91%), Gaps = 42/586 (7%)
Strand = Plus / Minus
Query: 1 tttagaaatctgtgaaatggggtttctgcctgccaggaagagccacttcccttacttccc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 919 tttagaaatctgtgaaatggggtttctgtctgccaggaagagccacttcccttacttccc 860
Query: 61 tttaccttggaaaatgggttatctagctccctgttagcacatacctgtaacatatatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tttaccttggaaaatgggttatctagctccctgttagcacatacctgtaacatatatcaa 800
Query: 121 agccctatgataa-----------------------------------------ctctct 139
||||||||||||| ||||||
Sbjct: 799 agccctatgataactcctaggctgttctgactaacactcctctatagctacctgctctct 740
Query: 140 ttataactgacaatgctttccctacctttttgctactttatcagtttccaagaggtagcc 199
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 739 ttataactgacaatgctttccctacctttttgctactttatcagtctccaagaggtagcc 680
Query: 200 gtgacagttttcacccccaatgtctctggctattgaagctccacacaagagataactatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtgacagttttcacccccaatgtctctggctattgaagctccacacaagagataactatg 620
Query: 260 tggcagtttcatatttccaataaaccctctttccacccatgcgttgacctacttcagtgg 319
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 619 tggcagtttcatatttccaataaaccctctttccacccatgtgctgacctacttcagtgg 560
Query: 320 tttcattgggccgtcgcttaaatctggtgtcagtacctgaaatctaaccagggacttcag 379
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 559 tttcattgggccgtcgcttaaatctggtgtcagtacccgaaatctaaccaggaacttcag 500
Query: 380 ttttgatgctttggtcatctcacaactgcagatgtaaatccttttcatatgctcccttgt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttttgatgctttggtcatctcacaactgcagatgtaaatccttttcatatgctcccttgt 440
Query: 440 gatggaatgcccatggattcagccacagctccatggtctccatgcacacatcccagcagg 499
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 439 gatggaatgcccatggattcagccacagctacattgtctccatgcacacatcccagcagg 380
Query: 500 acatcatgcttttgcctctacatcttttgtagagtttgt-tttttt 544
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 379 acatcatgcttttgcctctacatcttttgtagagtttgtatttttt 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
