Query= MSMg01no375_h03.b1 MSMg01no375_h03.b1 CHROMAT_FILE:
MSMg01no375_h03.b1 PHD_FILE: MSMg01no375_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:02 2005
(515 letters)
>mm_chr15_61341419_61342334
Length = 916
Score = 951 bits (492), Expect = 0.0
Identities = 507/512 (99%), Gaps = 1/512 (0%)
Strand = Plus / Minus
Query: 5 gaattccctcaatttgcatcaacccagaggccaatgtgtaattatttaaatgagaatttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gaattccctcaatttgcatcaacccagaggccaatgtgtaattatttaaatgagaatttt 657
Query: 65 ttttaagaggactgattccccaaggattgactcacaacctattgtcttgtggagccagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttttaagaggactgattccccaaggattgactcacaacctattgtcttgtggagccagta 597
Query: 125 atagcctcaaggaaaagaaagtcttccacttactgtggaagacttctctaagtgaaaata 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 596 atagcctcaaggaaaagaaagtcttccacttactgtggaagacttcactaagtgaaaata 537
Query: 185 gagtcttctgtctgtaacaaaagggctctgtgaggttagagtgtgttccatctgtcttag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gagtcttctgtctgtaacaaaagggctctgtgaggttagagtgtgttccatctgtcttag 477
Query: 245 cctcacttatgaaatgaactccttgctcatgagctgataagcatccccgttaccatggta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cctcacttatgaaatgaactccttgctcatgagctgataagcatccccgttaccatggta 417
Query: 305 tcaaggaggaactcagagctaacccagcatttggcatgtgggagacccacgaacaggtgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tcaaggaggaactcagagctaacccagcatttggcatgtgggagacccacgaacaggtgc 357
Query: 365 aaacactgtaaactcaaacatgagctgcaaacaccccctgtaagtgtacacaggaaccat 424
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaacactgtaaactcaaacatgaactgcaaacaccccctgtaagtgtacacaggaaccat 297
Query: 425 tctcaagcaagcccacaggaa-ggggtcttggccctagagcaaggagagctaccattaaa 483
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 296 tctcaagcaagcccacaggaagggggtcttggccctagagcaaggagagttaccattaaa 237
Query: 484 actgtttccaaattcctatcttcctttaaggc 515
|||||| |||||||||||||||||||||||||
Sbjct: 236 actgttgccaaattcctatcttcctttaaggc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_h03.g1 MSMg01no375_h03.g1 CHROMAT_FILE:
MSMg01no375_h03.g1 PHD_FILE: MSMg01no375_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:02 2005
(482 letters)
>mm_chr15_61190322_61191208
Length = 887
Score = 839 bits (434), Expect = 0.0
Identities = 471/486 (96%), Gaps = 5/486 (1%)
Strand = Plus / Plus
Query: 1 acccttcatggtcctgttgatgctcagttccctgagccgttcatttgtgtgcgcatacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 201 acccttcatggtcctgttgatgctcagttccctgagccgttcatttgtgtgtgcatgcct 260
Query: 61 gccttgtctactgccactgtgagatttgtaacaatagcatcaagtcatcactttctcctt 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccttgtctactgccactgagagatttgtaacaatagcatcaagtcatcactttctcctt 320
Query: 121 ccactaataccagataaattcttcctctgttcatcaatctgtttccttcatcgtcactct 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 ccactaataccagataaattcttcctctgttcatctctctgtttccttcatcgtcactct 380
Query: 181 tggtccttagatgcctcaaactcaattttcttatgtgaatggaagaaaaagagaaagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtccttagatgcctcaaactcaattttcttatgtgaatggaagaaaaagagaaagaga 440
Query: 241 agaagtatggagttcactggaggttgctactgcattcaggcttgtgtagaatttactcta 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagtatggagttcactggaggctgctactgcattcaggcttgtgtagaatttactcta 500
Query: 301 gaaggatagaatgaattaaatcaggtaactaacgaagcgatgtatttgtaccaggaccca 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 gaaggatagaatgaattaaatcaggtaactaatgaagcgatgtatttgtaccaggaccca 560
Query: 361 gtgagacaaattagaa-----ataaagctaagtgttgagatttcaaagagcaatcaaaac 415
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgagacaaattagaacaataataaagctaagtgttgagatttcaaagagcaatcaaaac 620
Query: 416 acacctgtaattccagattatcatgtatagagagatgatttcactctctctctctctctc 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct: 621 acacctgtaattccagattatcgtgtatagagagatgatttcactctctctctatcgctc 680
Query: 476 tctctc 481
||||||
Sbjct: 681 tctctc 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 887
Length adjustment: 10
Effective length of query: 472
Effective length of database: 877
Effective search space: 413944
Effective search space used: 413944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
