NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTGAAGCTTGTATATATCATTCTCATGAATGTTTGATAAT
TTTTTTAATTGCATATGCTTACTCCTTGATTTTTGTATGGTATATGTATG
TGTATGTGTGATGTGCCTTTATATAGGCATGTTTAGCTTGTATGGGGACA
CAGGTTTGTGTGCAGGTCCAAGTATACTTGTTTGCTGTTATGGCTGAAGA
CCAGTAGTGAATATATGGTGTTGTCTTTGATTATTCTTAACCATATATAT
TAAGGCAGAGTCTCTCCCATTGGTCTTCTCTGTCTCACATGTGCTGAGAA
TACAGGTAGGCTACCATGGCCATCCAGCATTACTATGAATGCTGAGGATA
TGACTATCATTCTTCATGCTTATGTGGTAAGTTCTTCACCCACTAAATCA
CCTCCCCAGCCCAATTTTATATAGGCATTGTCATAAGGTATATATTCCNT
TAAAACATAAATTTATGTAATATTACTTCCATTCCTTTTACTTATAAAGC
CTCTTCATGAAACAAGATTACACTAAACATTGTTTTTCAAAATGCCACTT
CCTTATACAAAGCTGATTCCTGTCTAACCCTTTTAAACCTACCCCCAACC
GAATCCAGGGTCTTCCGGAATCCAATTGCCTTGGAACTGGGGGTTTTGAA
CCCTTACCCTTGCCTTGTTAAAAAATTGTTAGTTTACCCGAAAAGAAAAT
TTGCCGGGTTTTGGACCCC

NNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTAT
CATGAATGGGTGTTGGACCTTGTCAAATGCTTTTTCTGCATCTAACGAGA
TGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTATATTG
ATGGATTTCCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTAC
TTGGACAGGATGGATGATTGCTTTCTTGTGTGTTCTTGGATTAGGTTAGC
GAGAATTTTATTAAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTC
TGAAATTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTA
ATAGTGGCTTCATAAAATGAGTTGGGTAGAGTGCCTTCTAGTTCTATCTT
GTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGAT
AGAACTCTGCACTAAACCCATCTGGTCATGGGCTTTTTTTTTGGCTGGGA
GACTATTAATAACTGCCTCTATTTCTTTANGGGGATATGGGACTGTTTAN
ATCATTAACCTGGCCCTGATTTAATTTGGGACCCTGAATCTGGCTAAAAA
TTTGTCCTTTCCCCCAAGTTTTTCGGTTTTGTTGAAAAAAACCTTTTGTA
CAGGGAACCAAAGCGGTTTTGAATTCTCCCCAACCCGGGGTTAGGCCCC

Query= MSMg01no376_h23.b1 MSMg01no376_h23.b1 CHROMAT_FILE:
MSMg01no376_h23.b1 PHD_FILE: MSMg01no376_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:24 2005
         (450 letters)



>mm_chr15_33283133_33283982
          Length = 850

 Score =  791 bits (409), Expect = 0.0
 Identities = 438/455 (96%), Gaps = 13/455 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttgaagcttgtatatatcattctcatgaatgtttgataatttttttaattgc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 194 gaattcacttgaagcttttatatatcattctcatgaatgtttgataatttttt-aattgc 252

                                                                       
Query: 65  atatgcttactc------------cttgatttttgtatggtatatgtatgtgtatgtgtg 112
           ||||||||||||            ||||||||||||||||||||||||||||||||||||
Sbjct: 253 atatgcttactctaatatcatatccttgatttttgtatggtatatgtatgtgtatgtgtg 312

                                                                       
Query: 113 atgtgcctttatataggcatgtttagcttgtatggggacacaggtttgtgtgcaggtcca 172
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 313 atgtgcctttatataggcatgtttagcttgtatggggacacaagtttgtgtgcaggtcca 372

                                                                       
Query: 173 agtatacttgtttgctgttatggctgaagaccagtagtgaatatatggtgttgtctttga 232
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtatacttgtttactgttatggctgaagaccagtagtgaatatatggtgttgtctttga 432

                                                                       
Query: 233 ttattcttaaccatatatattaaggcagagtctctcccattggtcttctctgtctcacat 292
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttatacttaaccatatatattaaggcagagtctctcccattggtcttctctgtctcacat 492

                                                                       
Query: 293 gtgctgagaatacaggtaggctaccatggccatccagcattactatgaatgctgaggata 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtgctgagaatacaggtaggctaccatggccatccagcattactatgaatgctgaggata 552

                                                                       
Query: 353 tgactatcattcttcatgcttatgtggtaagttcttcacccactaaatcacctccccagc 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgactatcattcttcatgcttatgtggtaagttcttcacccactaaatcacctccccagc 612

                                              
Query: 413 ccaattttatataggcattgtcataaggtatatat 447
           |||||||||||||||||||||||||||||||||||
Sbjct: 613 ccaattttatataggcattgtcataaggtatatat 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)