Query= MSMg01no376_n12.b1 MSMg01no376_n12.b1 CHROMAT_FILE:
MSMg01no376_n12.b1 PHD_FILE: MSMg01no376_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:50 2005
(505 letters)
>mm_chr15_14577443_14578353
Length = 911
Score = 795 bits (411), Expect = 0.0
Identities = 475/509 (93%), Gaps = 28/509 (5%)
Strand = Plus / Minus
Query: 5 gaattctattag-ctaacttttttggaacaaaagtatgaagaaagatgattttggaggaa 63
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattctattagccta--ttttttggaacaaaagtatgaagaaagatgattttggaggaa 454
Query: 64 aaattttataggcattttaattataatagactgttgcaagggtttttgaag----ttatt 119
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 453 aaattttataggcattttaattataatagactgttgcaagggtttttgaagttatttatt 394
Query: 120 ttctag---gtagtgaaaaggttttcagatagagaatggtttcagtacaaacataaaagg 176
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttctaggtagtagtgaaaaggttttcagatagagaatggtttcagtacaaacataaaagg 334
Query: 177 aatacataaaataaccatttttagatttttttcaggatcatctatgaatttaattcttta 236
|||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||
Sbjct: 333 aatacataaaataaccatttttagatttttttcaagatcacctaagaatttaattcttta 274
Query: 237 gtaataacccaaaagtcatatttttaatttgtaaatcacaggttattgaaacatgtaatt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtaataacccaaaagtcatatttttaatttgtaaatcacaggttattgaaacatgtaatt 214
Query: 297 tttatttctatatacatgtgtgtatgtttgtgtgtgtgcacatgcatgtgtgtgtgtgca 356
||||||||||||||||||||||||||| |||| ||| | ||||||||||||
Sbjct: 213 tttatttctatatacatgtgtgtatgt--gtgtatgt-----t-----tgtgtgtgtgca 166
Query: 357 cgtgcatgtgtgtgtgtgtttgcacatgtgtgtgtgtgtgtgt----cttcagtgtctgc 412
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 165 cgtgcatgtgtgtgtgt--ttgcacatgtgtgtgtgtgtgtgtgtgtcttcagtgtctgc 108
Query: 413 agactctgaagaggacattagatctgctggagctaacgttataggcaggtgtaatctact 472
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 107 agactctgaagaggacattagatctgttggagctaacgttataggcaggtgtaatctact 48
Query: 473 gtccataagtgctgggaaatgaacgccag 501
| |||||||||||||||||||||||||||
Sbjct: 47 gcccataagtgctgggaaatgaacgccag 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 911
Length adjustment: 10
Effective length of query: 495
Effective length of database: 901
Effective search space: 445995
Effective search space used: 445995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_n12.g1 MSMg01no376_n12.g1 CHROMAT_FILE:
MSMg01no376_n12.g1 PHD_FILE: MSMg01no376_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:50 2005
(569 letters)
>mm_chr15_14400711_14401679
Length = 969
Score = 762 bits (394), Expect = 0.0
Identities = 547/668 (81%), Gaps = 112/668 (16%)
Strand = Plus / Plus
Query: 4 atcatttattttttaattgaaaatagaatcttttatcatacaataaatctttattattgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 atcatttattttttaattgaaaatagaatcttttatcatacaataaatctttattattgt 171
Query: 64 tacccatccctccacttctccacttgctgcagttccttcccaagtcatacatccagatct 123
|||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 172 tacccatccctcca----t----ttgctgcagttccttcccaagtcatacatccagatct 223
Query: 124 acttaatatatttcttccacttgaacaaaacagatttctaagagataactatcagccgtg 183
|| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 224 ac-tactatatttcttccacttgaacaaaacagatttctaagagataacaatcagccgtg 282
Query: 184 g--------------------------------atatatatatatatac----------- 200
| ||||||||||||||||
Sbjct: 283 gagatatatatatatatatatatatatatatatatatatatatatatacatctatatata 342
Query: 201 -----------------------------------atat--------------------- 204
||||
Sbjct: 343 tatatgtatgtatatatatatatatatatatatatatatacacacacacacacacacaca 402
Query: 205 ---atacatatatacataaagtgtgtgtgcatatatatatatggcaaaatactttcaaaa 261
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cacatacatatatacatatagtgtgtgtgcatatatatatatggcaaaatactttcaaaa 462
Query: 262 tacttctcctatcccaacaggagaaaaatagtcccaagagaagtatatatagtcactgat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tacttctcctatcccaacaggagaaaaatagtcccaagagaagtatatatagtcactgat 522
Query: 322 ccattaattttcagaataaggatcccacaacaatacaaatataatatttgtaatatgtaa 381
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ccattcattttcagaataaggatcccacaacaatacaaatataatatttgtaatatgtaa 582
Query: 382 ttatatatgtatatacattgtataatatttttattaaatattgaatatcattatgcatca 441
||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 583 ttatatacgtatatacattgtataatatttt-attagctattgaatatcattatgcatca 641
Query: 442 tatatcaaacatcatacaacatactgtatttatgttatatgtcatgtgttatatgtttca 501
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 642 tatatcaaacttcatacaacatgctgtatttatgttatatgtcatgtgttatatgtttca 701
Query: 502 tgttgtatgttatatcttatactgaaatagtataatatataacatataattatactatat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tgttgtatgttatatcttatactgaaatagtataatatataacatataattatactatat 761
Query: 562 aattcttt 569
||||||||
Sbjct: 762 aattcttt 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
