BAC Information

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BAC

Clone NameMSMg01-377B23
Chromosome15 (Build37)
Map Location 88,017,083 - 88,017,461
singlet/doubletsinglet
Overlap genenone
Upstream geneAW049604, LOC100042329, LOC100042340
Downstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377B23.T7 (MSMg01no377_b23.b1)MSMg01-377B23.TJ (MSMg01no377_b23.g1)
ACCAG482278AG482279
length824811
length of high quality
(start - end)		360 (45 - 404)287 (80 - 366)
definitionCHROMAT_FILE: MSMg01no377_b23.b1 PHD_FILE: MSMg01no377_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:12 2005CHROMAT_FILE: MSMg01no377_b23.g1 PHD_FILE: MSMg01no377_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTTCTCATCCTCTTTATATCTGAGTATTTTATTACATCAGAAA
AACAAACTAAAGCTGTCTTCCTGTGCTTAGATCTCTAAACAGGGGATCAT
CTTGTATCTCCTTCATTGGGGAAAACTGAATCACATTTTAAGGTGTGCAC
CTTAAAAGCACAGGCCATTTGCCCTTTTCTCCTTCTCCTTCTTTCTCCTT
CTTTCTCCTTCTCCTTCTCCTCCTCCTCTCTCTTTCTCCTCCTCTTCCTC
CTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTC
CTTCTCCTCCCCCTCCTCCNTCCCTCCTTCTTCTTCTTCTCCCACTCCTC
CCCTCCTTTTTCTTCTTCTTCCTCTTTCTTCTTTCCCTTTTCCTCCTCCT
CCTTCTCCCTTTTTTCCCCTTCCCTTTATAATATTTATCTACTATCAATA
CTTTTTTCCTATACCACACTTTCCTCTCCTTTTTCTTAACATCATCCCTA
TTCCCCATAATTCCTTTATTCTTCTTTTCCTTACTTTCACTTCTCTTCCC
CTCCCCTTCTTCCTTCATCTATTTTCACCTTTATTTCTCATCATCTTTTT
CCTTTCCCCCCCCTCTTATATTTCCCATCCCCACCCCACATTATTTAACA
TTAATCTACCTTCACTTTTCATCCCTTACCCACTTCCTTCATTTCCACTC
TCTATTTCCCTTTTTCTCCTTCTN

NTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGTGTGCAGCACACTTTC
CTCAGACTGCATGTGGGTGTAAGAATACATACTAAGGGGTTAAATATAGA
CTCTATTCCCCAGTCATATTGATTTTAAAGGGGGGAAATAATTAACAATG
AGACACTTGATCCATAAATATTATAAATGAAACAACACAGCACTAAACAA
TCCATGGATCCAAGAAGACTTCACTCAGGGACTGGGAATGTCTTGAACAG
AATAAAAGCCCAGTGTGTTAGTGGCACATAGATAAGACAGTATTCAGAGG
GGAGTTTATAGTTTAACGCGTGGGGGAAATGAAACCTGTATAACTAAAAT
ATGCTCTTGCCCTAAGGAGGCCGCATGACTTTCATGAATTATTGCTCTTG
AGGCCACTGCCTGTTCCCCGATCAGTTTTGGGTTGCTTTCTCCTCGATTC
CCCCGCCTTTTTGCCTCCACTTCTTTTTTCTACCTTTTACCCCCCCCTCC
TTTTTCCCCCCCCTTTTTGCCACATTTGTCTCTACTTACTTTATTTCCTT
TTCCTCCTTCTCTACTTTGCTACCGCCATAACTACTCAACCCACCCAGTT
GTGCTGCGACCGGCCATTTTCCCCCCGCTTTTCTTTTTTATATTTATTTT
TCTCACTCTACTTGTGTGCCACATCGTTCCAATTTTTCCTTCTTTCCTTT
TTCTTCCCCTCTTTTCTCCCCCCATCTTACCATTTTTTTTTTTATTACTC
TCCCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_b23.b1 MSMg01no377_b23.b1 CHROMAT_FILE:
MSMg01no377_b23.b1 PHD_FILE: MSMg01no377_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:12 2005
         (360 letters)



>mm_chr15_88016879_88017638
          Length = 760

 Score =  514 bits (266), Expect = e-150
 Identities = 344/380 (90%), Gaps = 27/380 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccttctcatcctctttatatctgagtattttattacatcagaaaaacaaact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccttctcatcctctttatatctgagtattttattacatcagaaaaacaaact 264

                                                                       
Query: 65  aaagctgtcttcctgtgcttagatctctaaacaggggatcatcttgtatctccttcattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagctgtcttcctgtgcttagatctctaaacaggggatcatcttgtatctccttcattg 324

                                                                       
Query: 125 gggaaaactgaatcacattttaaggtgtgcaccttaaaagcacaggccatttgccctttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggaaaactgaatcacattttaaggtgtgcaccttaaaagcacaggccatttgccctttt 384

                                                                       
Query: 185 ctccttctccttct--ttctccttct--ttctccttctccttctcctcctcctctctctt 240
           ||||||||||||||  ||||||||||  ||||||||||||||||||| |||||| ||| |
Sbjct: 385 ctccttctccttctccttctccttctccttctccttctccttctccttctcctc-ctcct 443

                                                                       
Query: 241 tctcctcctcttcctcctcctcctcctc-ttcttcttcttcttctt-cttcttctt---- 294
            ||||||||| ||||||||||||||||| |||| ||||| |||||| || ||||||    
Sbjct: 444 cctcctcctcctcctcctcctcctcctccttctccttctccttctttctccttctttctc 503

                                                                       
Query: 295 cttctt----cttctt----cttct---tctcctcctcctcctcctcctcctc-ctc--- 339
           ||||||    ||||||    |||||   |||||| ||||| |||||||||||| |||   
Sbjct: 504 cttctttctccttctttctccttctctttctccttctccttctcctcctcctctctcttt 563

                               
Query: 340 ctcctcctcctcc-cctcct 358
           ||||||||||||| ||||||
Sbjct: 564 ctcctcctcctcctcctcct 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 161
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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