BAC Information

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BAC

Clone NameMSMg01-377G20
Chromosome15 (Build37)
Map Location 43,874,757 - 43,875,167
singlet/doubletsinglet
Overlap genenone
Upstream geneRspo2, LOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
Downstream geneTrhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377G20.T7 (MSMg01no377_g20.b1)MSMg01-377G20.TJ (MSMg01no377_g20.g1)
ACCAG482510AG482511
length773787
length of high quality
(start - end)		483 (46 - 528)414 (75 - 488)
definitionCHROMAT_FILE: MSMg01no377_g20.b1 PHD_FILE: MSMg01no377_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:36 2005CHROMAT_FILE: MSMg01no377_g20.g1 PHD_FILE: MSMg01no377_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAACTG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGTGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGTAGGGCATCATCCTGATTGAGGTAACACTTTTCCAAG
GAACTTACACCATATGTACTCCCTGATAAGTGGATATTATCCCAAAACCC
ACGATTCCTCTTATATTGAATACCTTTCCCTACCTTCTTGACCCTCCCCA
AAAATTTAACCCGTATTTGCCCACTCATTTCCCTCTCTTTAAATTGGCAC
CATATTCCCTTGTGTCGCCGTCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATG
AAGGGGTGTTGGACTTTGTTGAATGCTTTCTCAGCATCTAATGAGATGAT
CATGTTGTTTTTGTCTTTGACTTTGTTTATATAGTGGATTACATTGTGAT
ATGTTCACATCTTTTTATAATTTTAGTTTGTTTTACTTTGATGAAAAATA
ATGCTGTATATATCTACATACACATATTAATGATTTTAATAATCTCTTAT
CTTGTGGGATTTTTCTTGGGCTTGTGAGAGGTATAAATGAGAAAATGAGG
CTGTTAATAAGTTTAAAACTTAGGCTTTTTACTGGGACAGTACCCTGCTA
CTGTTTAAAATTAATCCAATTATTATGCCCTATTTCTTCATGCTCCAGGN
ATTGGCTGTCAGCTCTTTATTACAAGCAATCAATATTGAGACAGNCATCT
TCTTCTCCTTTCTATATATTATACCCCATGTACACCTGTTTACCTATTTA
CCCTTATATTTACCTTTATATTTTTTCCAAAAAAACATTTTTTTAATTAA
AAATTTTACGGCCCCTAAATTGCTTGGGTGTAAACAAAAAAAATTGCATT
GGCCTGTTCTGTCCTTTGTTTTCAGTCCCGAATTTATATAAACCCGCTTA
TTAACCCGCCCCTAAAACATTAATAATATTTTCTTTAATAACAGCACATC
TCTTATTCCTTTTTGTTCATATTTTTCGCCCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_g20.g1 MSMg01no377_g20.g1 CHROMAT_FILE:
MSMg01no377_g20.g1 PHD_FILE: MSMg01no377_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:36 2005
         (414 letters)



>mm_chr15_43874417_43875230
          Length = 814

 Score =  774 bits (400), Expect = 0.0
 Identities = 408/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgatctttccaagacttttatcatgaaggggtgttggactttgttgaatgctttctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ctgatctttccaagacttttatcatgaaggggtgttggactttgttgaatgctttctcag 692

                                                                       
Query: 61  catctaatgagatgatcatgttgtttttgtctttgactttgtttatatagtggattacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 catctaatgagatgatcatgttgtttttgtctttgactttgtttatatagtggattacat 632

                                                                       
Query: 121 tgtgatatgttcacatctttttataattttagtttgttttactttgatgaaaaataatgc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgtgatatgatcacatctttttataattttagtttgttttactttgatgaaaaataatgc 572

                                                                       
Query: 181 tgtatatatctacatacacatattaatgattttaataatctcttatcttgtgggattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgtatatatctacatacacatattaatgattttaataatctcttatcttgtgggattttt 512

                                                                       
Query: 241 cttgggcttgtgagaggtataaatgagaaaatgaggctgttaataagtttaaaacttagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cttgggcttgtgagaggtataaatgagaaaatgaggctgttaataagtttaaaacttagg 452

                                                                       
Query: 301 ctttttactgggacagtaccctgctactgtttaaaattaatccaattattatgccctatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctttttactgggacagtaccctgctactgtttaaaattaatccaattattatgccctatt 392

                                                              
Query: 361 tcttcatgctccaggnattggctgtcagctctttattacaagcaatcaata 411
           ||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 391 tcttcatgctccaggtattggctgtcagctctttattacaatcaatcaata 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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