BAC Information

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BAC

Clone NameMSMg01-378A18
Chromosome15 (Build37)
Map Location 102,240,844 - 102,426,797
singlet/doubletdoublet
Overlap geneSp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7
Upstream geneKrt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7
Downstream geneLOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378A18.T7 (MSMg01no378_a18.b1)MSMg01-378A18.TJ (MSMg01no378_a18.g1)
ACCAG482986AG482987
length778796
length of high quality
(start - end)
503 (49 - 551)403 (79 - 481)
definitionCHROMAT_FILE: MSMg01no378_a18.b1 PHD_FILE: MSMg01no378_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:26 2005CHROMAT_FILE: MSMg01no378_a18.g1 PHD_FILE: MSMg01no378_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,426,299 - 102,426,797)(102,240,844 - 102,241,246)
sequence
NNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTAAATGTCCAGAAAGATTATTCTTACTGTTAAGTAATTAA
ATTTTCTTGAATGCAGCAATGATAGAAATGACAAGGGATAGTAGAATAAC
AGGATGATTTAAGTATAACTAGGCACTTAAGAAAGACTTCTTCCTTCCAT
TGTGATTTCTGTTTTGGTAAACATGGTAAAAATAAAGGCTTACAAATTGG
GACGGAAGCAGGAAATCCTATTAGTGGCTGCCAGTTTAACATTCAAGACC
AATGGGAAGCTCACTTCTGTTAGATTTCAATGCTTTTCCTCCCAAAGTCT
TCCTTTCCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTAATAAGGCACAAT
TTTGTTTTCATATCAGATTCTTATTAAAGAGTCCAAATTATAATCATCCT
CACTTTTTGAAAATCTGAAATTTGTGGCTTGAGGAAAAATGTTCTTGAAC
TCACTTTCTACTCCCCTATTACCATAAAGAACCCTTTCTTTCTTCTGATA
ATCACTAAAAGGGGAGAATTTCACCCTAAGTGCTAGAATCAACGTAAAAG
AGAGGACTTCTCCCCTTATCCCTGTGTCCACTTCTACCTTGATAGAAGTA
GACCCAAAGGAAACCCTGAAAGCCAAGTTCTGGCCTTGTGAAAGTTAGGA
AAAAAAGCTCTGGACCTGGGAAGGAAATGTCTGCGGGAAACCACTTGGGA
ATCCCCAAAAAGAAGATTGCGTTTCTAG
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGCACCCATGTGGTATCTGA
CAACTGTGACTCCAGTCCAAGGAGATCCAACTCCTCCCTCTTCTAGCCTA
CTTGTCATTGTATGAATGTGGCACACAGTCATATATTTAGGTAATACACA
TAAAATAAAAATAAAATCTAAGATAACTAGAATGTGAAACCAAGACTAGG
ATTGATGCTAAGCAGTAAAATGCTTATTTAGCACGAGTCTAGACTGTGGA
TCCATGTTCAGCACCATATGAGAAATTATTTTTTGAGACAGGGTTTTTCT
GAGTAGCTCTCTTGTTCTGGAACTAACTCTATAGACCTGCCTGCCTCTGC
CTCCCCAATGCTGGGATTAAAGGCTTGCACCAATGTGCTGTGCTTTTCTT
TGTCCTTTAAGGATCAGGAGGTTTATTTTGGTTGGCAGNTTTATCTGATT
AAAAGTATTGAATATACTCCCATCTTGGTGGAGAAGGCATTACAACTGAG
GTAGTATCTGCTTTCTCAGTGTCACGAGCAAGAAGGCACCAAGCTATTTC
CTTAACATTTTTGGGTCACGAAACCGGGTTCTTGGCCCACCAATGTTAAC
AAATTGTGGAGTTTTTCACTTTGAACCGCTTTTTTCTTTAATTGGAAACT
CAAGGCGAAAAAGCCTTAATATGATTTCCAAAAAAAATATTTCCTTCCTC
GTTTTTTTTTTCTCCAACAAAGCATTTTATTTGCCGTGCGTTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_a18.b1 MSMg01no378_a18.b1 CHROMAT_FILE:
MSMg01no378_a18.b1 PHD_FILE: MSMg01no378_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:26 2005
         (503 letters)



>mm_chr15_102426299_102427201
          Length = 903

 Score =  911 bits (471), Expect = 0.0
 Identities = 492/499 (98%), Gaps = 1/499 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttaaatgtccagaaagattattcttactgttaagtaattaaattttcttgaa 63
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggaattctttaaatggggagaaagattattcttactgttaagtaattaaattttcttgaa 440

                                                                       
Query: 64  tgcagcaatgatagaaatgacaagggatagtagaataacaggatgatttaagtataacta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgcagcaatgatagaaatgacaagggatagtagaataacaggatgatttaagtataacta 380

                                                                       
Query: 124 ggcacttaagaaagacttcttccttccattgtgatttctgttttggtaaacatggtaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggcacttaagaaagacttcttccttccattgtgatttctgttttggtaaacatggtaaaa 320

                                                                       
Query: 184 ataaaggcttacaaattgggacggaagcaggaaatcctattagtggctgccagtttaaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ataaaggcttacaaattgggacggaagcaggaaatcctattagtggctgccagtttaaca 260

                                                                       
Query: 244 ttcaagaccaatgggaagctcacttctgttagatttcaatgcttttcctcccaaagtctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttcaagaccaatgggaagctcacttctgttagatttcaatgcttttcctcccaaagtctt 200

                                                                       
Query: 304 cctttcctttctttctttctttctttc-tttttttttaataaggcacaattttgttttca 362
           ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 199 ccttttctttctttctttctttctttcttttttttttaataaggcacaattttgttttca 140

                                                                       
Query: 363 tatcagattcttattaaagagtccaaattataatcatcctcactttttgaaaatctgaaa 422
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tatcagattcttattagagagtccaaattataatcatcctcactttttgaaaatctgaaa 80

                                                                       
Query: 423 tttgtggcttgaggaaaaatgttcttgaactcactttctactcccctattaccataaaga 482
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 79  tttgtggcttgaggaaaaatgttcttaaactcactttctactcccctattaccataaaga 20

                              
Query: 483 accctttctttcttctgat 501
           |||||||||||||||||||
Sbjct: 19  accctttctttcttctgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no378_a18.g1 MSMg01no378_a18.g1 CHROMAT_FILE:
MSMg01no378_a18.g1 PHD_FILE: MSMg01no378_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:26 2005
         (403 letters)



>mm_chr15_102240644_102241446
          Length = 803

 Score =  756 bits (391), Expect = 0.0
 Identities = 400/403 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagcacccatgtggtatctgacaactgtgactccagtccaaggagatccaactcctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 ccagcacccatgtggtatctgacaactgtgactccagtccaaggagatccaactcctcct 260

                                                                       
Query: 61  tcttctagcctacttgtcattgtatgaatgtggcacacagtcatatatttaggtaataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttctagcctacttgtcattgtatgaatgtggcacacagtcatatatttaggtaataca 320

                                                                       
Query: 121 cataaaataaaaataaaatctaagataactagaatgtgaaaccaagactaggattgatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataaaataaaaataaaatctaagataactagaatgtgaaaccaagactaggattgatgc 380

                                                                       
Query: 181 taagcagtaaaatgcttatttagcacgagtctagactgtggatccatgttcagcaccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagcagtaaaatgcttatttagcacgagtctagactgtggatccatgttcagcaccata 440

                                                                       
Query: 241 tgagaaattattttttgagacagggtttttctgagtagctctcttgttctggaactaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagaaattattttttgagacagggtttttctgagtagctctcttgttctggaactaact 500

                                                                       
Query: 301 ctatagacctgcctgcctctgcctccccaatgctgggattaaaggcttgcaccaatgtgc 360
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 501 ctatagacctgcctgcctctgcctccccaatgctgggattttaggcttgcaccaatgtgc 560

                                                      
Query: 361 tgtgcttttctttgtcctttaaggatcaggaggtttattttgg 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgcttttctttgtcctttaaggatcaggaggtttattttgg 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)