BAC Information

Click to search

BAC

Clone NameMSMg01-378E11
Chromosome15 (Build37)
Map Location 37,074,913 - 37,075,375
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz, Zfp706
Downstream geneLOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378E11.T7 (MSMg01no378_e11.b1)MSMg01-378E11.TJ (MSMg01no378_e11.g1)
ACCAG483162AG483163
length749771
length of high quality
(start - end)		239 (77 - 315)457 (79 - 535)
definitionCHROMAT_FILE: MSMg01no378_e11.b1 PHD_FILE: MSMg01no378_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:44 2005CHROMAT_FILE: MSMg01no378_e11.g1 PHD_FILE: MSMg01no378_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTTTCAACTTGCTTTCTTGGCCAATTGCTGGGTGCTACTATAGCC
CACTTGGAAAAGTGTGCCCTTATCAATTTCTTATCTCCCACCTGCCCTAA
ACTTCACCTGCTAATTATATCTCGGCCTGCCCACCTGTAGGAGTGACCAC
AGGCCACCACTCTGCCTGAGACCTCACATGTCTGGTCAACTTTACTCCAT
CAGAAGCCTAACAAACTCCATCTCTCCCTGCTTGCATCTCCCTACATGCC
TGCAGGGACCCAGAAGTCTTGTCTGTACCTTCTGCTAGTAATTGGCCCGC
CCACCTGTAGGAGTGACCACAGGCCACCACTCTGCCTGAGACCTCACATG
TCTGGTCAACTTTACTCCATCAGAAGCCTAACAAACTCCATCTCTCCTTG
CTTGCATCTCCCTACGTGCCTGCAGGGACCCAGAAGTCCTGCCTGTACCT
TCTGCTAGTAATTGGCCCATGGCTTTCTTTACTGTCAGATCAAGAACCAA
TTGGGGAACAGGACCTTATCATCAGCACCAACCCTACAGAAAGTAAGTTC
ATGAAGGGAGTTTACTCTACTCACTGCTGCAGGACACACTGTTTGTATGA
ATGAATGCAACCTACCAGTGAGCATAAACCATAAATTGCCAAGGCCTTCT
TGAAAAAACTCCTGCCAGCTTTCCACAAGAATAACAAGAATTTCCTTGT

CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAAGATCTGCCTGCTTCTGC
CTCCTGCTGGGATTAAGGGCGTGTAGTAGCATGCCCAGCTTCTGACAGGA
GTTTAAAATGCCCCCAGGATAGCAGCCACCATGCTTGACACCACAGGCTT
TCCCCAGCCTGCTGCTCCCTGGACTCAACTGACGGATGGCTCTGGTACTT
AGGACTTTTCTTCCCCTTTAGTGGTAGCATGTTTTGCTTTGTTTCACTGA
CTGTCCTTTATCCAAAGATTCTTCTTCACCATCCCCTAATTTCCTGTAGA
ATTGTCAGCTCTCCATCTTGTTCCACGGCAGGGAACAGCATGTGACCAGG
CTACTCCAATCAGAACCCCCTCCCTGCTATGGAGATTGACTTGAGCTGAA
TGGCAGGTTGAGTGTCTCTTTCTTATGGGCCAAACGGTCCGAACCCCCTA
AGCTGTCTGTTAACACAGCCTCCTCAGCTTCCCTGTGATTCCTGGGATCC
CCTGCCTCTTTCTATAAATGTTTTCATACGTATTATCTTGTCTCCAAGAC
CCCCGATGGAGCCCTAATTCTAAGTTTACTTGAGAAGCTGCTTCCTCTGC
TAGAGACTCCTTTCCACGGGATTTTAATGATGGGTGGAGGAAATTTATAC
CCACATCCCTCCGTTCCGCCAATTCTCTCTCCCATTTTACTCCCCTTTAC
TCTCCCATGTTGGCCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_e11.g1 MSMg01no378_e11.g1 CHROMAT_FILE:
MSMg01no378_e11.g1 PHD_FILE: MSMg01no378_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:44 2005
         (457 letters)



>mm_chr15_37074637_37075494
          Length = 858

 Score =  837 bits (433), Expect = 0.0
 Identities = 454/463 (98%), Gaps = 6/463 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaagatctgcctgcttctgcctcc----tgctgggattaagggcgtgtagtagcatgc 56
           ||||||||||||||||||||||||||    |||||||||||||||| |||||||||||||
Sbjct: 739 acaaagatctgcctgcttctgcctcctaaatgctgggattaagggcatgtagtagcatgc 680

                                                                       
Query: 57  ccagcttctgacaggagttt-aaaatgcccccaggatagcagccaccatgcttgacacca 115
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccagctcctgacaggagtttaaaaatgcccccaggatagcagccaccatgcttgacacca 620

                                                                       
Query: 116 caggctttccccagcctgctgctccctggactcaactgacggatggctctggtacttagg 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caggctttccccagcctgctgctccctggactcaactgacggatggctctggtacttagg 560

                                                                       
Query: 176 acttttcttcccctttagtggtagcatg-ttttgctttgtttcactgactgtcctttatc 234
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 559 acttttcttcccctttagtggtagcatgtttttgctttgtttcactgactgtcctttatc 500

                                                                       
Query: 235 caaagattcttcttcaccatcccctaatttcctgtagaattgtcagctctccatcttgtt 294
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caaaggttcttcttcaccatcccctaatttcctgtagaattgtcagctctccatcttgtt 440

                                                                       
Query: 295 ccacggcagggaacagcatgtgaccaggctactccaatcagaaccccctccctgctatgg 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccacggcagggaacagcatgtgaccaggctactccaatcagaaccccctccctgctatgg 380

                                                                       
Query: 355 agattgacttgagctgaatggcaggttgagtgtctctttcttatgggccaaacggtccga 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agattgacttgagctgaatggcaggttgagtgtctctttcttatgggccaaacggtccga 320

                                                      
Query: 415 accccctaagctgtctgttaacacagcctcctcagcttccctg 457
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 accccctaagctgtctgttaacacagcctcctcagcttccctg 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 858
Length adjustment: 10
Effective length of query: 447
Effective length of database: 848
Effective search space:   379056
Effective search space used:   379056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |