Query= MSMg01no378_o19.b1 MSMg01no378_o19.b1 CHROMAT_FILE:
MSMg01no378_o19.b1 PHD_FILE: MSMg01no378_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:32 2005
(508 letters)
>mm_chr15_102212896_102213804
Length = 909
Score = 841 bits (435), Expect = 0.0
Identities = 459/467 (98%), Gaps = 1/467 (0%)
Strand = Plus / Minus
Query: 5 gaatt-cacatgctaggccattattctaccagctgagctgtatagttgttcagctctgga 63
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaattccacatgctaggtcattattctaccagctgagctgtatagttgttcagctctgga 408
Query: 64 aagaaactcaaggagatgctccatagataaatgcctgctgatgtgtggagagaatccaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aagaaactcaaggagatgctccatagataaatgcctgctgatgtgtggagagaatccaga 348
Query: 124 ccaagctgacttccaaccagggaagctaatcttgtccttgtccccattgatagtgaggca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccaagctgacttccaaccagggaagctaatcttgtccttgtccccattgatagtgaggca 288
Query: 184 ggggagtgtctatctttgttctttaaacaatttatcttagtcactcctttttgtgtgtgt 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 287 ggggagtgtctatctttgttctttaaacaacttatcttagtcactcctttttgtgtgtgt 228
Query: 244 gtctctttctcattctctctctgcggggtctattacgcagacccatctatcttggaacta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gtctctttctcattctctctctgcggggtctattacgcagacccatctatcttggaacta 168
Query: 304 tctacgtagacaaggctggcctcaaactcacagagatctgtctgcttctgcctgaaagcg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tctacgtagacaaggctggcctcaaactcacagagatctgtctgcttctgcctgaaagcg 108
Query: 364 tggcctccattctcgtatatccagcttcttcaaatctctattttctgagtttgaggtcag 423
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 107 tggcctccgttctcctatatccagcttcttcaaatctctattttctgagtttgagggcag 48
Query: 424 cctggtctacagagtgagttctaggacagctagggctatacagagaa 470
|| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 47 ccgggtctacagagtgagttctaggacagccagggctatacagagaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space: 447702
Effective search space used: 447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_o19.g1 MSMg01no378_o19.g1 CHROMAT_FILE:
MSMg01no378_o19.g1 PHD_FILE: MSMg01no378_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:32 2005
(516 letters)
>mm_chr15_102049672_102050587
Length = 916
Score = 725 bits (375), Expect = 0.0
Identities = 455/517 (88%), Gaps = 55/517 (10%)
Strand = Plus / Plus
Query: 1 atttctgaaagaagaaccaccctgggatacccaggagctagagctacatgtgcgacagtt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 atttctgaaagaagaaccaccctgggatacccaggagctagagcttcatgtgcgacagtt 260
Query: 61 tggcagtccatgttgagggtgtgtttgtcaaacccaaaccaggacacacagccatgagtg 120
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcagtccatgttgagggtgtgtttgtcaaacccaaaccagg----------------- 303
Query: 121 taagatctaccaggcagactcatttcagtatgattactctgcagaggccaacactgtctc 180
|||||||||||||||||||||||
Sbjct: 304 -------------------------------------tctgcagaggccaacactgtctc 326
Query: 181 aagacttttctccatggttaagagattggtgttaggtaggggcagtgattctaatcaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagacttttctccatggttaagagattggtgttaggtaggggcagtgattctaatcaggt 386
Query: 241 atgctaggctggcaggcggccactaagttctacatctccactcatttcaccaaggccaag 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atgctaggcaggcaggcggccactaagttctacatctccactcatttcaccaaggccaag 446
Query: 301 aacacatccttg-ttattgaggaaagagtctcctgtagcccaaactggccttgaaatgtc 359
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aacacatccttgtttattgagaaaagagtctcctgtagcccaaactggccttgaaatgtc 506
Query: 360 ctgatccttctgcctctgcctcccatatgtggaatcacaggctcgtgtcacctcatccag 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 ctgatccttctgcctctgcctcccatgtgtggaatcacaggctcgtgtcacctcatccag 566
Query: 420 ataatagcacagtccttggtatcaactgtgccacagtcaggcaaggtgctacatgccatg 479
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 567 ataataacacagtccttgctatcaactgtgccacagtcaagcaaggtgctacatgccatg 626
Query: 480 agttcaaggccaccctggtttacacattgagttccag 516
|||||||||||||||||||||||||||||||||||||
Sbjct: 627 agttcaaggccaccctggtttacacattgagttccag 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
