BAC Information

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BAC

Clone NameMSMg01-379F21
Chromosome15 (Build37)
Map Location 40,949,891 - 40,950,381
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670013, LOC664872, Zfpm2, Ppia-ps25
Downstream geneOxr1, Abra, EG432946, LOC432947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379F21.T7 (MSMg01no379_f21.b1)MSMg01-379F21.TJ (MSMg01no379_f21.g1)
ACCAG483997AG483998
length773773
length of high quality
(start - end)
481 (40 - 520)481 (70 - 550)
definitionCHROMAT_FILE: MSMg01no379_f21.b1 PHD_FILE: MSMg01no379_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:07 2005CHROMAT_FILE: MSMg01no379_f21.g1 PHD_FILE: MSMg01no379_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGGTTCTCTGGAGTCTA
GCTTCTTGAGTTCTTTGTATATATTGGATATTAGACCTCTATCAGATGTA
GGATTGGTAAAGATCTTTTCCCTATTTGTTGGTTGCTGTTTTGTGCTGTT
GACAGTGTCCTTTGCCATACAGAAGTTTTTCAATTTTATGAGGTCCCAAT
TGTTGATCTTAGAGCATAAGTCATTGGTGTTCTGTACAGGAAATTTTCCG
GTGCTCATGTGTTCGAGGCTTTTCCCCCACTCTCTCTTCGATAAGTTTCA
GTGTCTCTGGTTTTATGTGGAGTTCCTTGATACCACGAGGTAATGAGAAG
AAGGTATATTCTTTTGTTTTAGGATGAAATGTTTTATAGATATCTGTTAA
ATCCATTTGGTTCATAACTTCTGTTATTTTCACCATGTCTCTGTTTTGTT
TATATTTCCATGATTTGTCCATTGATAAGAGTGGAGTATTGAAGACTCCC
ACTANGATTATGTGAGGTGCAATGTGTGCTTTTCCATTTTATACAGTTTC
TTTTATATATGTGAGTGCCCTTTGCTTTTGAGCCCGGTTTGTAAAAATTA
GAATTCCTCCTGCCAGGCTCTTTTTTTGGCCTTTCTGAAACCCCTCGCCT
AAAGCTTGTTCCTTTGGACCATTTTTTTGCCAATTTTTTCACCTCTTACC
TTTTACTATGTCCCCCTTCTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGAAGGAGGGGAACTGTGAACTTGAGGGAC
CCCAAAGTGCTCAGCAAGGCCAGAGCACTAAATGAAGAGCTACAAATTGA
TAATGACTGATACATCCAATCACTAAGTTAAAGTTTAGCACTAGTTAATA
TATTCCGTAAAAATTCTCTTCTCTCGCTCTTTAATTCTGGTCTCTGGTTA
GAAACCTCACCAATTTTTTTTCACACTCTAGAGAACTGGCCTTATGACAT
GATATGAGTGTTTACAGTTATGTTAATGGTCTCCAACTACTTCTACACCA
GAATTGTGTGTTAAGGAATTCAAGTCTCCTCCTAAGAGTGGGCATCTAAG
CAATCACAGATGGACACTCATGGTCTCCTGCAGACTCTTTGGGGTTTAGA
AGACCCCGCTGTATACCATTAGCATCCAAGCCACAGACCCAGCTTATGAC
CACCTTGCTTCACTTCTCACGTGAAACCCCATCTTTCCTAACTATGAGAA
CAGCACCAGAACTGGGCATACTGTTGAGAATCCTCTTGGTGTCTGGTANG
GAGAAAAAAGAGTACATTAATGTTTGTGGCTGTGGATACCATGGGAGGGG
CAAAATTCCAGGGGGACTGATAGAGAACTCTTAATCCCTGGATATGTGAG
TTCTACGGGGTTGGGCGGGACCCCCCGTGCCGGGTGGATTACCACCCTTT
GGCCCCGCGGTTTTTATCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_f21.g1 MSMg01no379_f21.g1 CHROMAT_FILE:
MSMg01no379_f21.g1 PHD_FILE: MSMg01no379_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:07 2005
         (481 letters)



>mm_chr15_40949701_40950581
          Length = 881

 Score =  861 bits (445), Expect = 0.0
 Identities = 475/491 (96%), Gaps = 10/491 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaaggaggggaactgtgaacttgagggaccccaaagtgctcagcaaggccagagcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ctgaaggaggggaactgtgaacttgagggaccccaaagtgctcagcaaggccagagcact 250

                                                                       
Query: 61  ----------aaatgaagagctacaaattgataatgactgatacatccaatcactaagtt 110
                     |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 251 aaaggccacaaaatgaagagctacaaattgataatgactgatacatccaatcaccaagtt 310

                                                                       
Query: 111 aaagtttagcactagttaatatattccgtaaaaattctcttctctcgctctttaattctg 170
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 311 caagtttagcactagttaatatattccgtgaaaattctcttctctcgctctttaattctg 370

                                                                       
Query: 171 gtctctggttagaaacctcaccaattttttttcacactctagagaactggccttatgaca 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtctctggttagaaacctcaccaattttttttcacactctagagaactggccttatgaca 430

                                                                       
Query: 231 tgatatgagtgtttacagttatgttaatggtctccaactacttctacaccagaattgtgt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgatatgagtgtttacagttatgttaatggtctccaactacttctacaccagaattgtgt 490

                                                                       
Query: 291 gttaaggaattcaagtctcctcctaagagtgggcatctaagcaatcacagatggacactc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 491 gttaaggaattcaagtctcctcctaagagtgggcatctaagcaatcacagatgaacactc 550

                                                                       
Query: 351 atggtctcctgcagactctttggggtttagaagaccccgctgtataccattagcatccaa 410
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 551 atggtctcctgcagactctttggggtttagaagaccccactgtacaccattagcatccaa 610

                                                                       
Query: 411 gccacagacccagcttatgaccaccttgcttcacttctcacgtgaaaccccatctttcct 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gccacagacccagcttatgaccaccttgcttcacttctcacgtgaaaccccatctttcct 670

                      
Query: 471 aactatgagaa 481
           |||||||||||
Sbjct: 671 aactatgagaa 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)