BAC Information

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BAC

Clone NameMSMg01-379G12
Chromosome15 (Build37)
Map Location 50,064,530 - 50,064,997
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379G12.T7 (MSMg01no379_g12.b1)MSMg01-379G12.TJ (MSMg01no379_g12.g1)
ACCAG484027AG484028
length758792
length of high quality
(start - end)		477 (41 - 517)420 (72 - 491)
definitionCHROMAT_FILE: MSMg01no379_g12.b1 PHD_FILE: MSMg01no379_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:10 2005CHROMAT_FILE: MSMg01no379_g12.g1 PHD_FILE: MSMg01no379_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTTATGTATCTGATACATGTGTAGTACAAATTCAATGGGATTAAAAATG
TTTTCTTCAGAAGAAACACTTGTTGATTCCTAATTGATATGAGTAGAGAA
TATCAAATATTTATGACTCATGGAACTTCACTTGATAATATTTTACATAC
AGAGAGGGTATTCATCAATCTGAATTACAGAAAGAGGTAGTATTAAAAGG
ATATTATCCTTTTTGAGCCATTGTTGTCCTCAGAATCATATTTGTGGTTT
TTTTTTTCTTTTGGTTTTTTTTATGAGTTAAATGTTTTAATGAAAAACAT
CAATTGTCACATTCAGGAAAGACTCTGTCACCTCACTTTACCACTGCATA
TTTAAGCATGACCTGCAGTGTGGATGGTAAAATCTGTTGTTAAAATTTGT
CAATCTCTTTCTCTATACTTCTGGCCTTTCAAAAGCTATAAAGGAATTTT
CATTTATTTCTCTTCATGTTGCCTTGTTAAAATACTTTGATAAATGCAAC
TGAAAGGAATAAAGTTTTATTCTGGTTCATAGTGNCAGGGTATATTGGTG
GACAATGTAAGTCATCAGGACCTGGAAAGAACTAACTGGGCATTATGTAT
CATTAACCAGGAGACGGAGATCTGCCAAACCCTGATAGAGGGGAACTCAA
TTTCTCCATTTTTTTTACGGCCCCGGGTATTCCGGCTAAGAACTCTCCCC
CCCCGGGN

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTATG
GGGTTATTTGATTTTCTGGAGTCCACTTTCTTGAGTTCTTTTTATATATT
GGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATACTTTCAGAAT
CTGTTGGTGGTCTTTTTGTCTTGTTGACTGTGTCTTTTGCCTTGCAGAAG
TTTGCAACGTTATGAGGTCCCATTTATCAATTCTCGATCTTACAGCATAA
GCCATTGCTGTTCTATTCTTAAACTTTTCCCCTGTACCCATATCTTCTAG
GCTTTTCCCTACTTTCTCCTCTGTAAGTTTAAGTGTCTCTGATTTTATGT
GGAGCTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAAATAGGAAT
GGATCATTTAGCATTCTTCTACATGATAACCTCCAGTTGTACCAGCACCA
TTTGTTGAAAATGCTGTCCTTTTTCCCCTGGATGGGTTTTGGCTCCCCTT
GGCTAGGACCCGGGGACTGTAGGTGTGTGGTTCTCCCTTTTTGCTTCCTC
TCATTCTGTCCCCCTGGTTTTACTCTTCCTTGTTTTTGTAACCGTTCCTT
CGCGGGTGTTTTGCTTTATCTCCGCCTTTTTTCGTCGGGCCCCGCTTTTG
TTTTTTGCTGTGGTCCCCCCCAGGTGGCTCCCCTTCCCCTTTGTGCCGCT
TGTCTCTGCTCTTATTTACCCCTTTCTTCTCCCCGCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_g12.b1 MSMg01no379_g12.b1 CHROMAT_FILE:
MSMg01no379_g12.b1 PHD_FILE: MSMg01no379_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:10 2005
         (477 letters)



>mm_chr15_50064327_50065197
          Length = 871

 Score =  785 bits (406), Expect = 0.0
 Identities = 455/478 (95%), Gaps = 14/478 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagttatgtatctgatacatgtgtagtacaaattcaatgggattaaaaatgttt 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ggaattcagttatgtatatgatacatgtgtagtacaaattcaatgggattaaaaatgttt 612

                                                                       
Query: 64  tcttcagaagaaacacttgttgattcctaattgatatgagtagagaatatcaaatattta 123
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 acttcagaagaaacacttgttgattcctaattgatatgagtagagaatatcaaatattta 552

                                                                       
Query: 124 tgactcatggaacttcacttgataatattttacatacagagagggtattcatcaatctga 183
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgactcatggaacttcgcttgataatattttacatacagagagggtattcatcaatctga 492

                                                                       
Query: 184 attacagaaagaggtagtattaaaaggatattatcctttttgagccattgttgtcctcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 491 attacagaaagaggtagtattaaaaggatattatcctttttgagccattgttgtcctca- 433

                                                                       
Query: 244 aatcatatttgtggttttttttttcttttgg----ttttttttatgagttaaatgtttta 299
           ||||||||||||| |||||||||| ||||||        |||||||| ||||||||||||
Sbjct: 432 aatcatatttgtgtttttttttttattttggcacc----ttttatgaattaaatgtttta 377

                                                                       
Query: 300 atgaaaaacatcaattgtcacattcaggaaagactctgtcacctcactttaccactgcat 359
           |||||||||||||||||||||||||||| |||||||||     |||||||||||||||||
Sbjct: 376 atgaaaaacatcaattgtcacattcagggaagactctg-----tcactttaccactgcat 322

                                                                       
Query: 360 atttaagcatgacctgcagtgtggatggtaaaatctgttgttaaaatttgtcaatctctt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttaagcatgacctgcagtgtggatggtaaaatctgttgttaaaatttgtcaatctctt 262

                                                                     
Query: 420 tctctatacttctggcctttcaaaagctataaaggaattttcatttatttctcttcat 477
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tctctatacttctggtctttcaaaagctataaaggaatttgcatttatttctcttcat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 871
Length adjustment: 10
Effective length of query: 467
Effective length of database: 861
Effective search space:   402087
Effective search space used:   402087
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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