BAC Information

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BAC

Clone NameMSMg01-379H19
Chromosome15 (Build37)
Map Location 67,761,783 - 67,762,052
singlet/doubletsinglet
Overlap genenone
Upstream geneNdrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000, EG665945, EG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379H19.T7 (MSMg01no379_h19.b1)MSMg01-379H19.TJ (MSMg01no379_h19.g1)
ACCAG484088AG484089
length755786
length of high quality
(start - end)
274 (40 - 313)54 (71 - 124)
definitionCHROMAT_FILE: MSMg01no379_h19.b1 PHD_FILE: MSMg01no379_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:16 2005CHROMAT_FILE: MSMg01no379_h19.g1 PHD_FILE: MSMg01no379_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GTTTCTTGGCTAGTATACAATTTATTATAAGGTCAAGTTAGCAAACAGGT
ATGGTCTTTGTCCTGTCCTGCCCCAGGATAACCTAGATATGAGCAGCTCC
AATTTATGGATTAGGGAATATAATGTGCAGTGGTGAGCCCTATCTGGTTC
CCTTAGATATAGACCCTGAGGTTAGATTTTGATCACAAGTTATTTATTTG
GAAGTGAACTCAGGAAGGTTCTGAGGGAAAGAGGGAATATGAGAAGTGGA
AGGGAAAGAAGTCATGATATGATGAATTTACAAGTAGGTTCCTATCAGAC
ATAACTAGGGGTTAGTCCAACTAGAAGCTGAGAAATGCTATAGATGTCTT
ATTCATAAGTGAAGAAGTCAGCGTGCTTTAAAATTCTTATTTACATCCAC
CATGACCCAAATTTCCCAAAACATTGCCTTCCTCTTTTGCATTCCCAGAT
TGTCTTATCGGTGGGCTGAAGACAATTGTATAGGCTTAGTAGAGCCTCCA
GGCATAGGCACACATGTTTAAGATTGTGAGGGTTGAGAGAGAATAGGAAG
ACTGTGGTGGTTGCTGTTGCTATAAGCAGGGGTGAATGACAGCTATGAAC
TGCTTATGGTCGAAGTGCTAGGAAAAAAGTCCGATACCGGTAGCCTGTTC
TTATTTACCTCCCCTCCCCACCCACCTTAGTGGTATGGCGGTTGACTCCC
GCTTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAGGAATTGTTTGCTTGGTTGGCTATTTA
TTAGTTTAGTGAGGGAAGGTGGCTTGCAACAGAACTAGAATATTGTATCT
CATTTATTATCAACTGAAAAACTCTGAACGATTACCTCTTATACCTCTAT
CGCCGCATAATGCCCCCATGATTGAAAGCCTATGAGATAAAATCATTGAT
GCTACTAACAAGGTGTGTTCCTCTAGAACACACAGTTGGAAACCGTGATC
CACTGTATTGAAGATTAATTTTTTTGATCTCCCAGCTTGATTTCTTCATT
TTGGATGTCTTAACTCAATCTCCCTAAGGGTTTCCGTTATCGACTGAATA
GCACACTTTACTCCCCTTCCTCTTTATATATTACGGTACCCCTTTCATGA
TTTACCGCCGTTTATCTCCCCCTTCCCTTGCACTGTCTCATCGTCCTCTA
GAGTCCTTCCTTATTTTCCCTGCTCTATCATTTTTTTATTTCCTCCTTGC
ATACCCTTGCCCATTCCTCCCCCTCCCCTTTACCTCCTCCTTCTCCTTCC
CCTCCTTTTTTCCTTTTTCCTTTTTCGCTACTCTTCCCTTCCTTCCCCCC
CCTCTTCTTTTCCCTCCATTCTTTCTCCCTTCCCTCCCTTCTCCCACCTT
CCTTTTATTTTCTTCCCCTCCCTCGTCCCTCCCCCTCTCCCTCGCTTTCC
TTTTCTCCCCTTTTTCCCCCCCCCCCCTCTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_h19.b1 MSMg01no379_h19.b1 CHROMAT_FILE:
MSMg01no379_h19.b1 PHD_FILE: MSMg01no379_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:16 2005
         (274 letters)



>mm_chr15_67761697_67762370
          Length = 674

 Score =  507 bits (262), Expect = e-148
 Identities = 268/270 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtttcttggctagtatacaatttattataaggtcaagttagcaaacaggtatg 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaattctgtttccaggctagtatacaatttattataaggtcaagttagcaaacaggtatg 297

                                                                       
Query: 65  gtctttgtcctgtcctgccccaggataacctagatatgagcagctccaatttatggatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtctttgtcctgtcctgccccaggataacctagatatgagcagctccaatttatggatta 237

                                                                       
Query: 125 gggaatataatgtgcagtggtgagccctatctggttcccttagatatagaccctgaggtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gggaatataatgtgcagtggtgagccctatctggttcccttagatatagaccctgaggtt 177

                                                                       
Query: 185 agattttgatcacaagttatttatttggaagtgaactcaggaaggttctgagggaaagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 agattttgatcacaagttatttatttggaagtgaactcaggaaggttctgagggaaagag 117

                                         
Query: 245 ggaatatgagaagtggaagggaaagaagtc 274
           ||||||||||||||||||||||||||||||
Sbjct: 116 ggaatatgagaagtggaagggaaagaagtc 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)