BAC Information

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BAC

Clone NameMSMg01-379H20
Chromosome15 (Build37)
Map Location 11,248,361 - 11,248,800
singlet/doubletsinglet
Overlap geneAdamts12
Upstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3
Downstream geneTars, LOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379H20.T7 (MSMg01no379_h20.b1)MSMg01-379H20.TJ (MSMg01no379_h20.g1)
ACCAG484090AG484091
length776794
length of high quality
(start - end)		441 (41 - 481)440 (69 - 508)
definitionCHROMAT_FILE: MSMg01no379_h20.b1 PHD_FILE: MSMg01no379_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:16 2005CHROMAT_FILE: MSMg01no379_h20.g1 PHD_FILE: MSMg01no379_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTTTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTTTCTGGTTTTATGTGAAGTTCCTTGATCCACT
TAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTT
CTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGCCTTATTTCTGGATCTTCAATTCTATTCCATTGGCCCACT
TGTCTGTCTCTATTCCAGAACCCCGGCAGTTTTTATTCCTATTGGCTCCT
GTTATTATATTTTACGCCTGGGCCGCGTGTATCCCCCCTTAAAACCCTTT
TATCCTTTGTAATTAAATATTTTCCAATCTCAGGGTATCTTCTGGTTTTT
CCTACCCCCTTATTCTATAATGCCAC

AATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCAGGCCCGACTTGACCATCTGGAGGGACTG
TCTTTTCATGTCATCATTTCCATGGAAATGATTATCCTCCATGATAGGTG
GATGGAATTTTGGGACATGGTCAACACTTGGCAAAGTCTGAAAACTGAGA
CATTTCTTTCGGTAATTTTGGATATGGAAGATGATTCATACATAAGTGGT
ATGCCTTTGTTGTACTCTGGATTTGTTATTAGTCGGAAGGGAAGACAACC
TCAGAGGAATGTGAATTTATCCTTTAAAACCTTATAGTATCAACACAGAA
AGAGGGAGGTGAGGAGTTATTAGAACATGCAGTGAGATTCTCAAGGAATT
CACCCTCTCTTTCCCAAATTCCAAATCTTCCTTTGAGGGAAGCGTCATAG
GGTGCAACAATGATGTTGCATGCTCTTGTCTGAAGGTAAGTCTCCCTAGT
GGGTAAGTCTGTCTAGTGAGATGCCTCGTGGTCTTCTTCTGAGACACAAA
CTTACTTCCCAGACAGTGGAGCTAATGCCTAAGACTACGGAGGGCCCCGG
AGCCCCTGGAAAACTTTTTAAGAAATTTTTCTCTTCTTTCAGAACATAAA
TCTGTGTAAAATAACCCCTGCCTTCCTTCCTAAGGAGTACATGCCCCCTT
TCGCATAACTTAAATCCTTGGCTATTTATTAACTAAATCAACAGTGAGTG
CCCTACCCCACTCCCTCCCGTTTTTTTGTTAATCCAATCCGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_h20.g1 MSMg01no379_h20.g1 CHROMAT_FILE:
MSMg01no379_h20.g1 PHD_FILE: MSMg01no379_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:16 2005
         (440 letters)



>mm_chr15_11248161_11249000
          Length = 840

 Score =  812 bits (420), Expect = 0.0
 Identities = 435/440 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaggcccgacttgaccatctggagggactgtcttttcatgtcatcatttccatggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ctcaggcccgacttgaccatctggagggactgtcttttcatgtcatcatttccatggaaa 581

                                                                       
Query: 61  tgattatcctccatgataggtggatggaattttgggacatggtcaacacttggcaaagtc 120
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 580 tgattatcctccatgataggtggatggaattttgggacatgggcagcacttggcaaagtc 521

                                                                       
Query: 121 tgaaaactgagacatttctttcggtaattttggatatggaagatgattcatacataagtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 520 tgaaaactgagacatttctttcggtaattttggatatggaagatgattcatagataagtg 461

                                                                       
Query: 181 gtatgcctttgttgtactctggatttgttattagtcggaagggaagacaacctcagagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 460 gtatgcctttgttgtactctggatttgttattagtcggaagggaagacaacctcaaagga 401

                                                                       
Query: 241 atgtgaatttatcctttaaaaccttatagtatcaacacagaaagagggaggtgaggagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atgtgaatttatcctttaaaaccttatagtatcaacacagaaagagggaggtgaggagtt 341

                                                                       
Query: 301 attagaacatgcagtgagattctcaaggaattcaccctctctttcccaaattccaaatct 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 340 attagaacatgcagtgagattctcaaggaattcgccctctctttcccaaattccaaatct 281

                                                                       
Query: 361 tcctttgagggaagcgtcatagggtgcaacaatgatgttgcatgctcttgtctgaaggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcctttgagggaagcgtcatagggtgcaacaatgatgttgcatgctcttgtctgaaggta 221

                               
Query: 421 agtctccctagtgggtaagt 440
           ||||||||||||||||||||
Sbjct: 220 agtctccctagtgggtaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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