BAC Information

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BAC

Clone NameMSMg01-380B08
Chromosome15 (Build37)
Map Location 12,027,138 - 12,027,518
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts12, Tars, LOC100039772, Npr3, LOC381002, Sub1, LOC100040027
Downstream geneZfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380B08.T7 (MSMg01no380_b08.b1)MSMg01-380B08.TJ (MSMg01no380_b08.g1)
ACCAG484543AG484544
length781771
length of high quality
(start - end)
109 (64 - 172)476 (68 - 543)
definitionCHROMAT_FILE: MSMg01no380_b08.b1 PHD_FILE: MSMg01no380_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:02 2005CHROMAT_FILE: MSMg01no380_b08.g1 PHD_FILE: MSMg01no380_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGCAATANGAATCACTATTTCCAGAGAATCCGCGGAATTCCA
GGTTTCTCAAGAATGTTGAGAGTGGGAAAAACAGTCTTCCCCAGAAAAGA
GTCCTGTAACTTGCTGTCCCACACCAAGACGTAGAATGTATGCATCCATA
CAAGTAACATTATACAGACTGCGGCAGGCTATTAGTGATGTATATGTACT
CCAAAACCGTGCGTTTTTCCTTTTCCTTTCCTTTCTCCTTTCCTCCCTTC
CTTCCTCTCCTTCCCCCCTCTTCCCCCCTTTTTTCTCCCTTTCTCTTTTT
CTCCTCCCCCCCTTCCTTTTCTTTCTCTTTCCCCCCTTCTCTCCCTTTTT
TTTTTTCTTTTTCCCCCTTTTTCCTCCTCCCCTCCTTTTTTTTTTTTTCC
TTTCCCCCCTCCCCCCCCCCCTTCTTATCCCTCTTTTTTTTTTTTTTCTC
TTCCTCTCTCCTTCTTTTTTCCCCCTACCTCTTTCTCTCATCTCTCTTCC
TCCCCCCTCTTCCTTATTTCTCCCCCCCTCTTATTCTTCTTTCTTTCTTT
TCTTTCCCTCCCTCTCTTTATCACCCATCCCTCTGCTTTTTTCCTCTCAT
TCTCCCCCCCTCTCTTTTTTCTCCTCTAATTTTATCTTCTCCACTATCTT
CTTTTTCCCTCCACCCCTCCTCCCCCTCTCATTTCCCTTCCATCTTTCTC
CTCTCTTCCCTCCTTCCCCCCTTTCTTTTTATCTCTTCTATTTTTTTCCA
CTTCCCTTACTCTCCCCCTCTCTCCTCCTTG
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCAGAGGACACTCAGTCGGAGCCCTCTACTT
CCTCCCTGTTTACTCGCTCACTGTCAAGGAGCAACCCTGTCACCTCTAAG
ATTACGGAAGCTTTCTGTGTTAACCACTGTGTTATGAGAGCAGTGCTGCA
TCTGTTCATTTATTATTTAATATGGATGTGTGCCTGTATGTGTACTGAGT
GCATGCATGTGTACCATGTGCATGCAGTTGCTCACCAAGACCAGAAGAGG
GCACCAAGTCCACTGGAACTAGCGTTAAAGGTGGTTGGGAGCTGCCTGAT
GTGGGTGCTGGGAACAAAACCTATGTCCTCTGAAAAAGCAGCAAGTGCTT
TTTAACCACTGACAACGAGCCATCTCTTTACCCTTTGCTTTTTGCTTTTC
ATTGTGTTTTTTGTAATAGATGAATTGCAAGTATTATAAATAGAGGTAGG
GTTGGGATGTAATTCCATTGATAGCTCGGCATGTATGAATCCTGTGTTTG
ATTATCAGCACCATATAATCCAGGTGTAATTGCTGCATGTTCCACCACCT
TGGTATTGTCACCCCCACTACCCCGCAAAATGCAATACTTATTTTTTAAT
ATTTCTCGTCCCCCCCTGACTCCTTCTCTTGTTTCACTTTTTTCTCTGTC
TCTCCCTTTCTCTTTTTCCTCACTCTTACTCCCTTATCTTATTCCTATAC
ACTCTCTTTTCTCCCCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_b08.g1 MSMg01no380_b08.g1 CHROMAT_FILE:
MSMg01no380_b08.g1 PHD_FILE: MSMg01no380_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:02 2005
         (476 letters)



>mm_chr15_12027138_12028013
          Length = 876

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%), Gaps = 1/382 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcagaggacactcagtcggagccctctacttcctccctgtttactcgctcactgtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcagaggacactcagtcggagccctctacttcctccctgtttactcgctcactgtcaa 322

                                                                       
Query: 61  ggagcaaccctgtcacctctaagattacggaagctttctgtgttaaccactgtgttatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagcaaccctgtcacctctaagattacggaagctttctgtgttaaccactgtgttatga 262

                                                                       
Query: 121 gagcagtgctgcatctgttcatttattatttaatatggatgtgtgcctgtatgtgtactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcagtgctgcatctgttcatttattatttaatatggatgtgtgcctgtatgtgtactg 202

                                                                       
Query: 181 agtgcatgcatgtgtaccatgtgcatgcagttgctcaccaagaccagaagagggcaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgcatgcatgtgtaccatgtgcatgcagttgctcaccaagaccagaagagggcaccaa 142

                                                                       
Query: 241 gtccactggaactagcgttaaaggtggttgggagctgcctgatgtgggtgctgggaacaa 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 141 gtccactggaactagcgttaaaggtggttgggagctgcccgatgtgggtgctgggaacaa 82

                                                                       
Query: 301 aacctatgtcctctgaaaaagcagcaagtgctttttaaccactgacaacgagccatctct 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 81  aacctatgtcctctgaaaaagcagcaagtgc-ttttaaccactgacaacgagccatctct 23

                                 
Query: 361 ttaccctttgctttttgctttt 382
           ||||||||||||||||||||||
Sbjct: 22  ttaccctttgctttttgctttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)