Query= MSMg01no380_h01.b1 MSMg01no380_h01.b1 CHROMAT_FILE:
MSMg01no380_h01.b1 PHD_FILE: MSMg01no380_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:31 2005
(425 letters)
>mm_chr15_20221068_20221894
Length = 827
Score = 785 bits (406), Expect = 0.0
Identities = 417/422 (98%), Gaps = 4/422 (0%)
Strand = Plus / Minus
Query: 7 ggaattcattcattattctctactttatgctttaacacatttgtagtatctctgttggca 66
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggaattcattcattattctctac-ttatgctttaacacatttgtagtatctctgttggca 569
Query: 67 gaaatatccaaatttccagtcttcaaatatgtgttactttgtaagatccttttcctttgt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gaaatatccaaatttccagtcttcaaatatgtgttactttgtaagatccttttcctttgt 509
Query: 127 ttgccatcatc---attattattattattagtagtagtagtagtagtagtactgaggttc 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttgccatcatcattattattattattattagtagtagtagtagtagtagtactgaggttc 449
Query: 184 atctgttttaagatagtattttggtattttgactgaaaatatcaataacatatttcttga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atctgttttaagatagtattttggtattttgactgaaaatatcaataacatatttcttga 389
Query: 244 attaatttttgtgaaagaagatatacattttgacatactagacagtaataaagtatcaca 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 388 attaatttttgtgaaagaagatatacattttgacatacaagacagtaataaagtatcaca 329
Query: 304 attgatattgagtagtagtaaaaaaattaagcataataattggtagagtggagtttgaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attgatattgagtagtagtaaaaaaattaagcataataattggtagagtggagtttgaga 269
Query: 364 aagtatgctattaatttattttaaatgcatctagactttatgtaaattatctgcttatgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aagtatgctattaatttattttaaatgcatctagactttatgtaaattatctgcttatgt 209
Query: 424 tc 425
||
Sbjct: 208 tc 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 827
Length adjustment: 9
Effective length of query: 416
Effective length of database: 818
Effective search space: 340288
Effective search space used: 340288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_h01.g1 MSMg01no380_h01.g1 CHROMAT_FILE:
MSMg01no380_h01.g1 PHD_FILE: MSMg01no380_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:31 2005
(460 letters)
>mm_chr15_20042581_20043440
Length = 860
Score = 772 bits (399), Expect = 0.0
Identities = 444/459 (96%)
Strand = Plus / Plus
Query: 1 aaatctaattttgcctctgatggaggtgcttctacctattttcttgatatgacattgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatctaattttgcctctgatggaggtgcttctacctattttcttgatatgacattgatg 260
Query: 61 aattttaactggtccagaactagttacttatttccttaaaccgcacgggtaagggcgtat 120
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 aattttaactggttcagaactagttacttatttccttaaaccgcatgggtaagggcgtat 320
Query: 121 gaattttatttacgtttttggctcctggtgagtggacaacacttctctgaaagcttcata 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattttatttatgtttttggctcctggtgagtggacaacacttctctgaaagcttcata 380
Query: 181 tccattcactatctgtatttgatggatggaaaatacagaagacacaaagttaaatagtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccattcactatctgtatttgatggatggaaaatacagaagacacaaagttaaatagtta 440
Query: 241 cagaaggggagtctgaagtgggctcaaagattatcaaagcaccttacgcaaaattctcaa 300
|||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 441 cagaagggaagtctgaagtgggcttaaagattatcaaagcaccttatgcaaaattctcaa 500
Query: 301 acaattagtaaattttataaaggaaaaatgtgtttgaaacaccacctctgtacctcattc 360
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 501 acaattagtaaattttataaaggaaaaatgtatttgaaacaccacctctgtatctcattc 560
Query: 361 ccttctctcgattgtcctgtgcagagaattgttttcacgtgatcactggtgctttcgggg 420
|||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct: 561 ccttctcttgattgtcctgtgcagagaattgttttcacttgatcactgatgctttcaggg 620
Query: 421 ctttctagtacccattcaacacatccccacttatgcata 459
||||||| ||||||||||||||||||| || ||||||||
Sbjct: 621 ctttctattacccattcaacacatccctacatatgcata 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
