Query= MSMg01no381_k16.b1 MSMg01no381_k16.b1 CHROMAT_FILE:
MSMg01no381_k16.b1 PHD_FILE: MSMg01no381_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:09 2005
(451 letters)
>mm_chr15_62615964_62616815
Length = 852
Score = 754 bits (390), Expect = 0.0
Identities = 434/450 (96%), Gaps = 7/450 (1%)
Strand = Plus / Minus
Query: 6 gaattctctgtgattcc--atgacaattccaggcaatgagacctgcacatgagtaatgta 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gaattctctgtga--ccctatgacaattccaggcaatgagacctgcacatgagtaatgta 595
Query: 64 gagca-cccctagcccagcccttggcatctcctcaaggttctcaacacatactctctgtt 122
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 594 gagcaccccctagcccagcccttggcaactcctcaaggttctcaacacatactctctgtt 535
Query: 123 ctcctc-gtgttcagttggcagacacagaaaacccttcaagggatagtcatgtggttaca 181
|||| | |||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct: 534 ctcc-cagtgttcagttggcagacagagaaaacccttcaagagatagtcatgtggtgaca 476
Query: 182 gactggcacacttatggctttgaggaaaatctaagaaaccaattgcatctacaataagct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gactggcacacttatggctttgaggaaaatctaagaaaccaattgcatctacaataagct 416
Query: 242 ctgatatgagaaagtgattgttggtcttgttcactagatcattgagatttcaggactgta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctgatatgagaaagtgattgttggtcttgttcactagatcattgagatttcaggactgta 356
Query: 302 tgctgttcatcaaacatcagaaggaatttgataattcagtgttgggcgtttctgtaacaa 361
|||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 355 tgctattcatcaaacatcagagggaatttgataattcagtgttgggtgtttctgtaacaa 296
Query: 362 aaaggtaaaagaaagcattaattggcaagcaaatgtaatgaacaaaactaatacaagaag 421
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 295 aaaggtaaaagaaagcattaattggcaaggaaatgtaacgaacaaaactaatacaagaag 236
Query: 422 gagggttaggtcatttaattatgcaaaaag 451
||||||||||||||||||||||||||||||
Sbjct: 235 gagggttaggtcatttaattatgcaaaaag 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 852
Length adjustment: 10
Effective length of query: 441
Effective length of database: 842
Effective search space: 371322
Effective search space used: 371322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_k16.g1 MSMg01no381_k16.g1 CHROMAT_FILE:
MSMg01no381_k16.g1 PHD_FILE: MSMg01no381_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:09 2005
(477 letters)
>mm_chr15_62428872_62429748
Length = 877
Score = 857 bits (443), Expect = 0.0
Identities = 471/481 (97%), Gaps = 5/481 (1%)
Strand = Plus / Plus
Query: 1 agcacaagcagacaaaattttagcttctaggaactgtgacttctaagaaaagagacatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcacaagcagacaaaattttagcttctaggaactgtgacttctaagaaaagagacatac 260
Query: 61 aagcagcatacgcttacagttacaaataggataacttgaaacaatggtacgtacatttta 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcagcataagcttacagttacaaataggataacttgaaacaatggtacgtacatttta 320
Query: 121 gcacctagagagaataataacagaaggaaactgactcctctgaagttggattgggtggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacctagagagaataataacagaaggaaactgactcctctgaagttggattgggtggga 380
Query: 181 tgttccagaagggttcctgggatgtgatgctgaactgctgaatgagaagcagccaggagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttccagaagggttcctgggatgtgatgctgaactgctgaatgagaagcagccaggagc 440
Query: 241 tgggcgtggtgttgcacgcctttaatcccagtactcgggaggcagaggcaggcagatttc 300
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tgggcgtggtggtgcacgcctttaatcccagtactcgggaggaagaggcaggcagatttc 500
Query: 301 tgagttcaaggtcagcctggtctacaaagtgaattccagaacagccagggctatacagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagttcaaggtcagcctggtctacaaagtgaattccagaacagccagggctatacagag 560
Query: 361 aaaccctgtctcaaaaaacaaagtaagcaagcaagcaaacaaacaaacaaacaacaacaa 420
||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||
Sbjct: 561 aaaccctgtctcaaaaaacaaagcaagcaag-aagcaatcaaacaaacaaacaacaacaa 619
Query: 421 caacaa-aa--aaac-aaaaaaccaaaatcaacaaaaaagagaagcaaccagccctaggt 476
|||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caacaacaacaaaaccaaaaaaccaaaatcaacaaaaaagagaagcaaccagccctaggt 679
Query: 477 t 477
|
Sbjct: 680 t 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
