BAC Information

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BAC

Clone NameMSMg01-383K23
Chromosome15 (Build37)
Map Location 89,477,932 - 89,478,358
singlet/doubletsinglet
Overlap genenone
Upstream geneBrd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a
Downstream geneLOC676575, Syt10, Alg10b, Cpne8, EG627342
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383K23.T7 (MSMg01no383_k23.b1)MSMg01-383K23.TJ (MSMg01no383_k23.g1)
ACCAG487297AG487298
length757788
length of high quality
(start - end)
434 (37 - 470)373 (73 - 445)
definitionCHROMAT_FILE: MSMg01no383_k23.b1 PHD_FILE: MSMg01no383_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:47 2005CHROMAT_FILE: MSMg01no383_k23.g1 PHD_FILE: MSMg01no383_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATC
CCACTCTGCCTAGGGTGCCGTCCTTCATACTCATGATCTTTTACCTCTCA
CACACCCTTCTTTTTGAAGGGGTTTCCTGGCCAATTCAAATGAAAATCTT
GCTTGGTGTGGATTCTTGTGCCCTCTTGGGTTGTATTAGATCTCTGGATC
CTAATACTCCAACAAGACCATACCTCCTAATCCCTCTCAAATACCATCAC
TCCCTAATGACCAAACATTCAAGTCTATGAGCTCACAGAGGCCATTCCTA
TTCAAACCACCACACTCCACTGCCTACTCCCCATAGGCTTGTAGCCATAT
CATAATGCAAAAATGCATTCAGCCCAACTTCAAAAGTTCCCATTGTCTAC
AAGTCTCAACACTGTTTAAAAGTTCAAAGTTCAAAATATCACGTATTAAT
CTCTTAACTGTACCCCCCCAAAAATCAGGAAGCAGATCACATACTCCCAA
CATACAATGGGAGAGAATATTCATTATTATTCCCAAAGTGAGGAAGGGAA
GGAGCATAATGAAAAATGGAGACCTTAAAACCCGCGGGACCATTTCCGAA
ATCGGTTTTCCCTGGCCGGGTTAAAGAACCCTTAAAATCCAACCCCTTCT
AATTTTTTTGACGGAGCAACTCCTCCTTCTTGGTTGGTTGGCCCCTTTCT
TTGGAGGAACCCCAAACTGGGGACTTCTAATCTTTGGTTTTTTTAGGCAC
CAAGTTT
ATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAACAGGGTTTAAAGGAATTTGGAATT
ATCCAGTATTAATAAATTTATTAATTAATTAATAAATGTGCTGGGACTAC
CATAAAAATATATGAATGGCTTAAACAATAGGAACTTACTTCCCCATTGA
GGTATTGGTGGGGTTGAATTCTTCTGAGGCTTCTGAACTTGGCAAATGTA
CTGGCTACATTTATGTCAGTGGAGCACAAACTATAGTGACCTGAGAGGAA
AGATCCTCAATTGAGAAAATGTCTCCATAAGATCTGGCTACAGGCCAGCC
TGTAGAGCATTTTCTTAATTAGTGATTGATGGGGAGGTTCTCAGCCCATT
GTGGGTGATGCAACTCCTTGGGCTGGTGATCCTGGGTTTTATAAGAAGCA
GGCTGAACAAGCCGTGTGGAACAAGTCAGTAAGCAGCACCCCCTCCATGG
ACCTCTGCATCAGCTTTCTGACTCCAGGATTCCCGCCCTGCCTTGAGTTC
CCTGAACTGACTTTCATTACTTGAGGGACCATGGACTGGGATAAATACGC
CTGGAAAAAACTATTCCCTCCCCACCCTTGTTTTTTTTGTCTCGCCGCGG
CGGGTTTGTCTCTACACTCTATATACCTATTTAAATCTAACTTGCTTAGG
AGTAATTTTTTGCTCTTTCCTTTTCTTTCTTTCTGCCCGCCCGGTTATTT
TAATTATTCACCCACTTTTTATGAATAAACAAAACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_k23.b1 MSMg01no383_k23.b1 CHROMAT_FILE:
MSMg01no383_k23.b1 PHD_FILE: MSMg01no383_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:47 2005
         (434 letters)



>mm_chr15_89477728_89478561
          Length = 834

 Score =  764 bits (395), Expect = 0.0
 Identities = 419/427 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatcccactctgcctagggtgccgtccttcatactcatgatcttttacctctca 64
           |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatcccactctgtctagagtgccgtccttcatactcatgatcttttacctctca 264

                                                                       
Query: 65  cacacccttctttttgaaggggtttcctggccaattcaaatgaaaatcttgcttggtgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacacccttctttttgaaggggtttcctggccaattcaaatgaaaatcttgcttggtgtg 324

                                                                       
Query: 125 gattcttgtgccctcttgggttgtattagatctctggatcctaatactccaacaagacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattcttgtgccctcttgggttgtattagatctctggatcctaatactccaacaagacca 384

                                                                       
Query: 185 tacctcctaatccctctcaaataccatcactccctaatgaccaaacattcaagtctatga 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 tacctcctaatccctctcaaataccatcactccctaatgatcaaacattcaagtctatga 444

                                                                       
Query: 245 gctcacagaggccattcctattcaaaccaccacactccactgcctactccccataggctt 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctcatagaggccattcctattcaaaccaccacactccactgcctactccccataggctt 504

                                                                       
Query: 305 gtagccatatcataatgcaaaaatgcattcagcccaacttcaaaagttcccattgtctac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 gtagccatatcataatgcaaaaatgcattcagcccaacttcaaaagttcccatcgtctac 564

                                                                       
Query: 365 aagtctcaacactgtttaaaagttcaaagttcaaaatatcacgtattaatctcttaactg 424
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 565 aagtctcaacactgtttaaaagttcaaagttcaaaatctctcgtattaatctcttaattg 624

                  
Query: 425 taccccc 431
           |||||||
Sbjct: 625 taccccc 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)