Query= MSMg01no383_l19.b1 MSMg01no383_l19.b1 CHROMAT_FILE:
MSMg01no383_l19.b1 PHD_FILE: MSMg01no383_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:51 2005
(550 letters)
>mm_chr15_12826108_12827055
Length = 948
Score = 748 bits (387), Expect = 0.0
Identities = 496/571 (86%), Gaps = 70/571 (12%)
Strand = Plus / Plus
Query: 5 gaattcttcccagactgtttctggtgcccctaccccctgtgcccaccctgcagtactata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gaattcttcccagactgtttctggtgcccctaccccctgtgcccaccctgcagtactata 222
Query: 65 cgagctacattccacattctgcctgttcgccctggagccgctgtttcgttagacaactct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 cgagctacattccacattctgcctgttcgccctggagccgctgtttcgttagacaactct 282
Query: 125 gagcctcacttttcagtcttcgctgttgtctgctccaaagcttctaccaagtgagc---- 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gagcctcacttttcagtcttcgctgttgtctgctccaaagcttctaccaagtgagcagag 342
Query: 181 --------------------------------------tggccctggactatgttttcag 202
|||||||||||||||||| |||
Sbjct: 343 gctgagcgggccccctgccagccgcagctcaagtgagctggccctggactatgtttgcag 402
Query: 203 gcatgtcttcctcatgtggagagccacaggcattctttcttcctcacatgttggtaacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gcatgtcttcctcatgtggagagccacaggcattctttcttcctcacatgttggtaacgg 462
Query: 263 tcattttacattggcttccagagcacccaggtggccttgtgacgtcctgccggtgttgat 322
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 463 tcattttacattggcttccagagc--ccaggtggccttgtgacgtcctgccggtgttgat 520
Query: 323 tccatgatccatgtcttgttcttttgcgtattctgatcatgcagcagagctaattttctt 382
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 521 tccatgatccatgtcttgttcttttgcgtattctgatcatgcagcagagctagttttctt 580
Query: 383 tttctttctctttctctttctctttctctttctctttctctttctctttctctttctctt 442
||||||| ||||| |||| ||| ||||| |||| ||| ||||| |||| ||
Sbjct: 581 tttctttttcttt----ttct-ttt-tcttt----ttct-ttt-tcttt----ttct-tt 623
Query: 443 tctctttctctttctctttctctttctctttctctttctctttctctctctggctccctc 502
| ||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 624 t-tctttctctttct--------ttctctttctctttctctttctctctctgtctccctc 674
Query: 503 cctctttctttctctctctctctctctctct 533
||||||||| |||||||||||||||||||||
Sbjct: 675 cctctttctctctctctctctctctctctct 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 948
Length adjustment: 10
Effective length of query: 540
Effective length of database: 938
Effective search space: 506520
Effective search space used: 506520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_l19.g1 MSMg01no383_l19.g1 CHROMAT_FILE:
MSMg01no383_l19.g1 PHD_FILE: MSMg01no383_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:51 2005
(496 letters)
>mm_chr15_12996016_12996911
Length = 896
Score = 861 bits (445), Expect = 0.0
Identities = 456/460 (99%)
Strand = Plus / Minus
Query: 37 tctttctaattcataaaacacataccgtgcttttattgcatgtttatgtggcaattaatg 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tctttctaattcataaaacacataccgtgcttttattgcatgtttatgtggcaattaatg 837
Query: 97 aggtatttgtatatggcttctaattagttctttacagccgctggtcctgcagctcttatt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 aggtatttgtatatggcttctaattagttctttacagccgctggtcctgcagctcttatt 777
Query: 157 aacctcatcttactcataagggtcctggctagggaggttaattggctccgctgtggtctt 216
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 776 aacctcatcttactcataagggtcctggctagggaggttaattggctctgctgtggtctt 717
Query: 217 acacctgatgagggacacagtgaacgtgacctgtacttaagactcagatgtacgtcccac 276
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 716 acacctgatgagggacacagtgaatgtgacctgtacttaagactcagatgtacgtcccac 657
Query: 277 atgctgcacccagctgctaaccccagctgctgaccacggctgcccaggaacgcgcatccg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atgctgcacccagctgctaaccccagctgctgaccacggctgcccaggaacgcgcatccg 597
Query: 337 aagggcaagagtggtgcttgcttaccttgtcagttaatgaaatggctttttaagagtgcg 396
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 596 aagggcaagagtggtgcttgcttaccttgtcagttaatgaaatggctttttaagagtgtg 537
Query: 397 cttcagtcattagaacctgtcaacggagagttaacttttccctagtggctctttctctgt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cttcagtcattagaacctgtcaacggagagttaacttttccctagtggctctttctctgt 477
Query: 457 cacggtggtttcagtatttccttgncatatcgcattacac 496
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 476 cacggtggtttcagtatttccttggcatatcgcattacac 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
