BAC Information

Click to search

BAC

Clone NameMSMg01-383P10
Chromosome15 (Build37)
Map Location 26,253,325 - 26,253,554
singlet/doubletsinglet
Overlap genenone
Upstream gene4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622, AK162044
Downstream geneFbxl7, LOC622531, LOC625311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383P10.T7 (MSMg01no383_p10.b1)MSMg01-383P10.TJ (MSMg01no383_p10.g1)
ACCAG487511AG487512
length759753
length of high quality
(start - end)
609 (62 - 670)236 (67 - 302)
definitionCHROMAT_FILE: MSMg01no383_p10.b1 PHD_FILE: MSMg01no383_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:09 2005CHROMAT_FILE: MSMg01no383_p10.g1 PHD_FILE: MSMg01no383_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTCCAA
ATAGTTTGCACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACA
ACAAATGCACTAAATAAAGATAGAATACTAAAACCAGTAAGGGAAAAAGG
TCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCAC
CAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTA
AGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAAT
TACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACTAAATTCACCC
ATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAAA
CAATACAAGGACGGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCT
CAACGAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACA
ACAAAAATAACAGGAAGCAACAATTACTTCTCCTTAATATCTCTTAATAT
CAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTAC
ACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAA
AAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCCAAG
CAATGGGATGAAGAAACAAGCTGGAGTAGCCATCCTAAGAATATTCTAAT
CTGATAAGT
TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTTCCAATCACTCCATGGCCTATCTATCTCCCAGTCAGAGAATTGCTTTG
CTCTTCTGTTGCATGTGAACAGAAGCATCGGCTCTCCCTGGATTGCATCC
TGACTGTCCTTCAGATCCACAGGCTTTCAGTGCCGTTGTGTCAGCTCTCT
TGTTTCTCAGACCTTCAGGAGCCTCCTGGGATCACAGATGCTTTTCTGAT
GAATCTCTAGCCACACTGATTAATGATCTGAGGACTCATCAGGCTCAGCC
ATATGAACCACTTCCTGGCCATAAATCTCTCAACACACACACACACTCAG
ACTCACACACACACACACATGCAAATGCACATGCATGTGCCCATACACAT
GTACATACACAGACACTCACACAGACACACACACAGACACACACACAGAC
ACACACACAGACACAGACACACAGACACACAGACACACACACACACACAC
ACACACACACACACACACACATACACACACACACTCACACACACACTATT
TGGTATTGGTTCTATTGAGAGCCCTAACAAATCCTCAATGTAGTTTCAGG
ATTTGTTAAAATATACATTTAGGACTTGAGCCCAGTGGAGGACTTTTTTG
TTAAAGATAGGCAAATCTCTCACCCAGGACCCTCTGAAATAACTTATTAT
ACCCTTCCTAGACGTTATCACCCCCCCTCTTTCTACCCTTTGAATGTCTA
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_p10.g1 MSMg01no383_p10.g1 CHROMAT_FILE:
MSMg01no383_p10.g1 PHD_FILE: MSMg01no383_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:09 2005
         (236 letters)



>mm_chr15_26253125_26253758
          Length = 634

 Score =  391 bits (202), Expect = e-113
 Identities = 224/232 (96%), Gaps = 2/232 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcctatctatctcccagtcagagaattgctttgctcttctgttgcatgtgaacagaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcctatctatctcccagtcagagaattgctttgctcttctgttgcatgtgaacagaagc 260

                                                                       
Query: 61  atcggctctccctggattgcatcctgactgtccttcagatccacaggctttcagtgccgt 120
           ||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcggctctccctgggttgc--cctgactgtccttcagatccacaggctttcagtgccgt 318

                                                                       
Query: 121 tgtgtcagctctcttgtttctcagaccttcaggagcctcctgggatcacagatgcttttc 180
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  ||
Sbjct: 319 tgtgtcagctctcttgtttctcagactttcaggagcctcctgggatcacagaggctgctc 378

                                                               
Query: 181 tgatgaatctctagccacactgattaatgatctgaggactcatcaggctcag 232
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 379 tgatgaatctctagccacactgattaacgatctgaggactcatcaggctcag 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 634
Length adjustment: 9
Effective length of query: 227
Effective length of database: 625
Effective search space:   141875
Effective search space used:   141875
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)