BAC Information

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BAC

Clone NameMSMg01-384B01
Chromosome15 (Build37)
Map Location 37,526,140 - 37,526,696
singlet/doubletsinglet
Overlap geneNcald
Upstream genePabpc1, LOC626746, Ywhaz, Zfp706, LOC670911, LOC667492, LOC100041288, Grhl2, LOC667498, 4930447A16Rik, LOC100041313
Downstream geneLOC667534, Rrm2b, LOC100041478, Edd1, Odf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384B01.T7 (MSMg01no384_b01.b1)MSMg01-384B01.TJ (MSMg01no384_b01.g1)
ACCAG487589AG487590
length722721
length of high quality
(start - end)
557 (39 - 595)556 (69 - 624)
definitionCHROMAT_FILE: MSMg01no384_b01.b1 PHD_FILE: MSMg01no384_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:16 2005CHROMAT_FILE: MSMg01no384_b01.g1 PHD_FILE: MSMg01no384_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TAAATCAGTTTAGATAATTAAGAATCAAAGGTTCCTAATTTGAGTAACAG
CAGCCATTTGCCCAGTATATACTGAGGCCAAATTTGCACTGAAATGTTGA
GGAGACTCCTCGGTTCCAATTCTACTGAAAATTTAGAATTATAATACATA
CATACATACATACATACATACATACATACATACATACATACATACATACA
TACATAAAAATGGGTGAAATCAAGCCACTTGGAGCTCCCCCAAGTCTTGG
GTTTGATCAAACAGGCCTGGAAAGAAGGGGGTATGTCTCCACCCCTCCAA
TTCCAGGGAAAGTCCTGCCTCTTAAGATTGCAGGGTCAGTCAAGGGTCTC
AGTTTTCTGCTGTGGACCAATCTTAGCCAGTGGAAAGTTCTTGGAATTGT
AGACTGAGTGAGTCTAATACAGATGGTGCTCCAGTGACTTCCAGACCTAA
TTGAAGTGACCCTGAGTCAGGTGTAATGGATTACCTTGTCCAGGTGTTTT
ACAATGTTATACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCGGATGG
GAGTCGGATGGTGATAGGCAACCCCTGGAGACCTATGTGCTGTGCCTCAG
GCAAGTCTTATACCCAACTTTGGCTGTTGTAATGGCTAAAGTTGTTTTTC
CACGAACTAAGACGTTTATGAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCAGTGCTTCTAAATATTTCCAAAAATTGTTC
CTAAGAGAGACAAAGAAAAAGGTCCTGGGGGAAGAGACCACCAAGGACCT
GCCTTTAGTGACCTACTTTCCCTACCAAGGCCCCAAATCCTAAAGTTTCC
ACACTTTAGCACTATTGGCTGGAAACCAACTATTCAGCAGGAGCCTTGGA
GGGTGCTTTTAATATTCAGACTGTGACGCTATTGGCCTGGTTGTTTAGAA
GTCTAAGAAGCCTGACTGAGGGGCAGACTAGTTCAGGAATGCACTCCAGA
TCTTAATTTTCAACCATACACCAGTTTCTCATCCATTAGAACTCTGTGAA
CAATGAGAAATTATTCCTACCTATTTTATGTGTATGGACAAGCAATATAG
CAAATGAACATAATAATGTATTTAAAGACTCGTTAAATATTTTATAGCTA
GCCTTTGTTGTTACTCTTAGCCCATCTAAGAGGTAGAGCAACTGTCTCTT
AGAGATGCTCACTGTATTCATGGTTCTACCATGCTTTGCTAAAGCTGGGG
AGATTTGAGTCAACAATCTGACTCAGAGCCACAACTCTCCATAACCATAT
TCTATGGAGCGTAGGAACCGTCTTGTTCTTAAAGAGAGCTTCGCTTTTAT
ACCCTGCCTATCACACTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_b01.g1 MSMg01no384_b01.g1 CHROMAT_FILE:
MSMg01no384_b01.g1 PHD_FILE: MSMg01no384_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:16 2005
         (556 letters)



>mm_chr15_37525941_37526896
          Length = 956

 Score = 1062 bits (549), Expect = 0.0
 Identities = 555/557 (99%), Gaps = 1/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagtgcttctaaatatttccaaaaattgttcctaagagagacaaagaaaaaggtcctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ccagtgcttctaaatatttccaaaaattgttcctaagagagacaaagaaaaaggtcctgg 259

                                                                       
Query: 61  gggaagagaccaccaaggacctgcctttagtgacctactttccctaccaaggcccc-aaa 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 260 gggaagagaccaccaaggacctgcctttagtgacctactttccctaccaaggccccaaaa 319

                                                                       
Query: 120 tcctaaagtttccacactttagcactattggctggaaaccaactattcagcaggagcctt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcctaaagtttccacactttagcactattggctggaaaccaactattcagcaggagcctt 379

                                                                       
Query: 180 ggagggtgcttttaatattcagactgtgacgctattggcctggttgtttagaagtctaag 239
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 ggagggtgcttttaatattcagactgtgatgctattggcctggttgtttagaagtctaag 439

                                                                       
Query: 240 aagcctgactgaggggcagactagttcaggaatgcactccagatcttaattttcaaccat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagcctgactgaggggcagactagttcaggaatgcactccagatcttaattttcaaccat 499

                                                                       
Query: 300 acaccagtttctcatccattagaactctgtgaacaatgagaaattattcctacctatttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acaccagtttctcatccattagaactctgtgaacaatgagaaattattcctacctatttt 559

                                                                       
Query: 360 atgtgtatggacaagcaatatagcaaatgaacataataatgtatttaaagactcgttaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgtgtatggacaagcaatatagcaaatgaacataataatgtatttaaagactcgttaaa 619

                                                                       
Query: 420 tattttatagctagcctttgttgttactcttagcccatctaagaggtagagcaactgtct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tattttatagctagcctttgttgttactcttagcccatctaagaggtagagcaactgtct 679

                                                                       
Query: 480 cttagagatgctcactgtattcatggttctaccatgctttgctaaagctggggagatttg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttagagatgctcactgtattcatggttctaccatgctttgctaaagctggggagatttg 739

                            
Query: 540 agtcaacaatctgactc 556
           |||||||||||||||||
Sbjct: 740 agtcaacaatctgactc 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)