BAC Information

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BAC

Clone NameMSMg01-384C01
Chromosome15 (Build37)
Map Location 28,724,721 - 28,725,210
singlet/doubletsinglet
Overlap genenone
Upstream geneTrio, LOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384C01.T7 (MSMg01no384_c01.b1)MSMg01-384C01.TJ (MSMg01no384_c01.g1)
ACCAG487637AG487638
length794752
length of high quality
(start - end)
244 (35 - 278)491 (64 - 554)
definitionCHROMAT_FILE: MSMg01no384_c01.b1 PHD_FILE: MSMg01no384_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:21 2005CHROMAT_FILE: MSMg01no384_c01.g1 PHD_FILE: MSMg01no384_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAGAT
CTGCATGGCTCTGTCTCCTGAATGCTGTAATTACAGGTATGTACCACCAC
ATCTGGACTTAAGCTTTTCTTCATCTAGAACCTTCTCTGTTCTATGTATG
TGTGTGTGTTTGTGTATATGCATGAGTGTTTATGTGTGGTGTGCATATGT
GTACTGTGTATATGGTGTTTCTGCATGCATGTGGTCTGTATATGTTTGTT
TATGTGGTGTGTGTGTGTGTGTGTGTGTNNNTTTTATTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATTTTTTTTTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTGTTTTCTTTTTTTTTTTTTTTTTTTTTTTGTTTGTTTTG
TTTGTTGTGTTTTTTTAGATTTTTGTTTGTGTTATTTTATTTCAAACCTT
TATTATCCTCTTAACTCCATATCACCCTATTTCCCTTCTATATCTTCTAT
TTCCTCTACTTCCCTCATCCTTTCCTTCCCCTTTCATCTCTTCATCCTTC
CTCTCAATCTTTCCTTACCTTCCACATCTTTCCCTAATTTCCTTTCTTCT
TTCATCTTTCCTCATTTTTTTCTTCTCTTTCCCTCTCCTTCTTCACCTTC
TTTCTTTTCTCTTTTTTCCCTTTTCTTCCCTCTCCTTCCTCCCTCCCCTT
TATCACCCTTCTTCTTCCTTCTCTTTCACCTTCCACTCTTCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTCTTAATTCAGGAAGGCTAAACTCTCTCAAAGTGA
ACTCTGTTAAAATTTCATAGACGTGTCAAAAATCTTTTGCTGGGTATTTA
ATTCTGGTTACTTCCTGTGGTGGCTTTTCTAATGTCCATGACTTGTATTA
ACTTGAAATTAAAATATGTATCTTCTTAAACCCAGTTAACAGAAAAAAAA
ATCCTGGTAGAAAGTCATGACTCAAAAGGGATTTAGATAGAAATGGTTTC
AACTATTTCTTCCTTAAATTCAAATGAGGTGACTGACACAGGGGGCCATT
TTTAAAGGGCCACCCAGTCAGAAACCCTAGGTTACAGGAGATGCTTGTCT
GAATTGGGAGGCCCTCTCACCATATCTGTTTCCTCAAACAGACATGTCTT
TCTCATACTTGTGTGATAACTCTTTGTGTCTGGGGAATGAAAAGTCCTAA
GTCACTGGTAACTTTCTAGACAGCAGCATCGATAGCACAAGGGAAGTAGG
ACCTAACCAGTTTAAATAAGCAAAGTATGATTATAAACTCTCCTTACACA
CCATTTTTCTGTTGAACTAGATTCTCATCCTTATACCTAATTGACTAATT
GGTCTCCCATACCTACTGTAAGGAGTTGGTGAACAAAGAATATGTGCTTT
TCTTTAATGTAATAATGGATTTTATATTGAAGAAACCTTTTATATCCTAT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_c01.g1 MSMg01no384_c01.g1 CHROMAT_FILE:
MSMg01no384_c01.g1 PHD_FILE: MSMg01no384_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:21 2005
         (491 letters)



>mm_chr15_28724521_28725410
          Length = 890

 Score =  919 bits (475), Expect = 0.0
 Identities = 487/491 (99%), Gaps = 1/491 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcttaattcaggaaggctaaactctctcaaagtgaactctgttaaaatttcatagacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcttaattcaggaaggctaaactctctcaaagtgaactctgttaaaatttcatagacg 260

                                                                       
Query: 61  tgtcaaaaatcttttgctgggtatttaattctggttacttcctgtggtggcttttctaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcaaaaatcttttgctgggtatttaattctggttacttcctgtggtggcttttctaat 320

                                                                       
Query: 121 gtccatgacttgtattaacttgaaattaaaatatgtatcttcttaaacccagttaacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gtccatgacttgtattaacttgaaattaaaatatgtatcttcttaaacccagttaacag- 379

                                                                       
Query: 181 aaaaaaaatcctggtagaaagtcatgactcaaaagggatttagatagaaatggtttcaac 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaaaaaaccctggtagaaagtcatgactcaaaagggatttagatagaaatggtttcaac 439

                                                                       
Query: 241 tatttcttccttaaattcaaatgaggtgactgacacagggggccatttttaaagggccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatttcttccttaaattcaaatgaggtgactgacacagggggccatttttaaagggccac 499

                                                                       
Query: 301 ccagtcagaaaccctaggttacaggagatgcttgtctgaattgggaggccctctcaccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccagtcagaaaccctaggttacaggagatgcttgtctgaattgggaggccctctcaccat 559

                                                                       
Query: 361 atctgtttcctcaaacagacatgtctttctcatacttgtgtgataactctttgtgtctgg 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 atctgtttcctcaaacagacatgtctttctcatacttgtgtaataactctttgtgtctgg 619

                                                                       
Query: 421 ggaatgaaaagtcctaagtcactggtaactttctagacagcagcatcgatagcacaaggg 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaaatgaaaagtcctaagtcactggtaactttctagacagcagcatcgatagcacaaggg 679

                      
Query: 481 aagtaggacct 491
           |||||||||||
Sbjct: 680 aagtaggacct 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space:   423280
Effective search space used:   423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)