BAC Information

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BAC

Clone NameMSMg01-384F02
Chromosome15 (Build37)
Map Location 10,807,712 - 10,808,241
singlet/doubletsinglet
Overlap genenone
Upstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
Downstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772, Npr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384F02.T7 (MSMg01no384_f02.b1)MSMg01-384F02.TJ (MSMg01no384_f02.g1)
ACCAG487783AG487784
length740788
length of high quality
(start - end)
534 (35 - 568)137 (65 - 201)
definitionCHROMAT_FILE: MSMg01no384_f02.b1 PHD_FILE: MSMg01no384_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:35 2005CHROMAT_FILE: MSMg01no384_f02.g1 PHD_FILE: MSMg01no384_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAAGC
AAAGGAAAACATGCTATTACCCTCTTAGTATCTCTGAGCTGAATTTTCAC
TTTCTGTCAAACAAATAAAACCAAATCACCCTTAAAGATTCCATCTCTTA
CTATACAAGTTCAACCCCACTCATTGGTTTCTGCCGGGGTTGCTCTATCT
GAGTGCTGCGTGGTCAACTGACCACCCTTTCCCTTTAGCACACTTTGTGC
TTTCTGGGCTTTATAATGCATAGAAAAGTAATCGAGTCACTATTAAAATT
TAAGATCTTCACTCATGCAATCCTTTTTTAAGAAATCACTTCATATCGTG
TTCTTCAGGAGACCCTGTACATGAGATGGATGGGTAGCTTCCACTGTCAA
CCTGACACAACTGGATGCAGGGGTCCAACTGAGAAAGTGTCTGCATCCCA
TTGGTCTGTGAGCATGTCTCGGGACATTTTCTTAATTGTTAGTTAATGTG
GGCAGGTGCCGTGTGGACAGTTCTACTCCTGAGCAGGGACACCTGGGCTC
TGTAAGAAAGGGAGTTGAGCAGCCCAGTGAGGAAGCAAGTAAGCCAGTAA
GTAGCCTTCCTCTGTGGTTTCTGCTTTAAGCTCCTGCCTTGAAATCCTGG
CTTGGCTTCCTTTGACAATGGACTCAAACTGCAAACTGAAATAACCCCCT
GTCCTCACCAAGTGGCTTTGGGTCCCAGAGCCTACCCCAT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTAAGTAATTAAGTAGTCAAAATACTATGTATGTT
CATATGTATATATGTATGCATGTGTGTGTGTATATGTGTGTGTTTGTGTG
TGTATGCCCAATAGTGAGTGATCTCAGATATTATCTGCTTATTATTCTAG
TATTGCTGGTATCTGATCCTGTCATTTTTACTTACTATGTTATCCACCTC
ATACTCATCTGTGTCCCCACATCCTGAGGTTAACTTTAATTATTCTGTAT
ATTTTAATATATGTCACACTAACCATACTACTGACTTACTTATTTCCTTA
CCCTTACCATTCTTACCAACGGCCATATCTGCCTGTTATTCTTTCTATAC
TCCTCTCTTACCATTCCCATATTATATTCCTTTATCCTCCCTCTGTAGGT
ATTTAAAATTCTACTCTTCTATAAATTACCTTGTGTTTTGACGCTATTTC
CCTCATTTCCTTCCTCATTATCCTTTCCCCTCCACTCCCTATTATTTCTC
CCTTTCTCTTTTCTATCGCACTTTCCTTTTCTCCTCACATTAAACCTCTC
GCCTTCCTGCTCCCCCCCCCCTTTTTTCTATTCCTTTACTCCTTCACATA
CCCAACCTTACTTTTTTTCTTAGCTCTAGCCTTTTCTTTATTTCCTCTTT
TTCCTCTCTCCCTTTATTTCTTTACCCCTATATTTTTTTATTTTTCTTTC
TCCTTCTTCTTTCTCCTTTTATTTTTTCTTCACCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_f02.b1 MSMg01no384_f02.b1 CHROMAT_FILE:
MSMg01no384_f02.b1 PHD_FILE: MSMg01no384_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:35 2005
         (534 letters)



>mm_chr15_10807682_10808615
          Length = 934

 Score =  917 bits (474), Expect = 0.0
 Identities = 516/530 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaagcaaaggaaaacatgctattaccctcttagtatctctgagctgaattttc 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 560 gaattcttaagcaaaggaaaacatgctattacccttttagtatctctgagctgaattttc 501

                                                                       
Query: 65  actttctgtcaaacaaataaaaccaaatcacccttaaagattccatctcttactatacaa 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 500 actttctgtcaaacaaataaaaccaaattacccttaaagattccatctcttactatacaa 441

                                                                       
Query: 125 gttcaaccccactcattggtttctgccggggttgctctatctgagtgctgcgtggtcaac 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 440 gttcaaccccactcattggtttctgccgcggttgctctatctgagtgctgcctggtcaac 381

                                                                       
Query: 185 tgaccaccctttccctttagcacactttgtgctttctgggctttataatgcatagaaaag 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 tgaccaccctttccctttagcacactttgtgctttctgggctttgtaatgcatagaaaag 321

                                                                       
Query: 245 taatcgagtcactattaaaatttaagatcttcactcatgcaatccttttttaagaaatca 304
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 taatcaagtcactattaaaatttaagatcttcgctcatgcaatccttttttaagaaatca 261

                                                                       
Query: 305 cttcatatcgtgttcttcaggagaccctgtacatgagatggatgggtagcttccactgtc 364
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttcacattgtgttcttcaggagaccctgtacatgagatggatgggtagcttccactgtc 201

                                                                       
Query: 365 aacctgacacaactggatgcaggggtccaactgagaaagtgtctgcatcccattggtctg 424
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 200 aacctgacacaactggatgcaggggtccaactgagaaagtgcctccatcccattggtctg 141

                                                                       
Query: 425 tgagcatgtctcgggacattttcttaattgttagttaatgtgggcaggtgccgtgtggac 484
           ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 140 tgagcatgtctggggacattttcttgattgttaattaatgtgggcaggtgccgtgtggac 81

                                                             
Query: 485 agttctactcctgagcagggacacctgggctctgtaagaaagggagttga 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  agttctactcctgagcagggacacctgggctctgtaagaaagggagttga 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)