BAC Information

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BAC

Clone NameMSMg01-384H15
Chromosome15 (Build37)
Map Location 52,836,944 - 53,038,606
singlet/doubletdoublet
Overlap geneExt1
Upstream geneAard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6, LOC100039745
Downstream geneSamd12, EG665097, EG621631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384H15.T7 (MSMg01no384_h15.b1)MSMg01-384H15.TJ (MSMg01no384_h15.g1)
ACCAG487904AG487905
length765743
length of high quality
(start - end)
535 (33 - 567)531 (63 - 593)
definitionCHROMAT_FILE: MSMg01no384_h15.b1 PHD_FILE: MSMg01no384_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:47 2005CHROMAT_FILE: MSMg01no384_h15.g1 PHD_FILE: MSMg01no384_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,038,075 - 53,038,606)(52,836,944 - 52,837,474)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCTGTA
GACCAAGCTAACCTTGAACTCAGAGATCCACCTGCCTCTGTCTCACGAGT
GTTGGGAATAAAGGCCCGGGCCACCACTCCCAGGGGAACAAATATTTGTT
AACTAAATACCATGAAATTTGTGTTTCTCTAATACGGCATTTGAGGAATC
TGATTCTCTGTTATTGCTACCTTAATTTAAAGAGCAAGTTAGCAACAGAG
ATATAATATAATGCTGTTGGAATAGAAGGCCAGACCACCTTAACTCCAAC
TTGAGAAAGTCGTTTTGATGACTTAGTTTCCGCTTGAGCTTATGTGTAAC
CAGCTTCAGTGCCCGTTGTTTCCAAAGCTTTGGTGGTGTACAAGGACACG
GTGACTCCTGTATTCAAGTATGAACTGAGGCCCGGTTTCGGGTCTTTTGC
TAGTCGAGTTACTTTTAGGAGGTTTAGGGTCATGTGTAGAACTGCGATAA
TGTAGCTCAGCACATCTTTTTTATGTTCATATCAATGATGCTTCACTCTT
TGCCAACTCCCATGTCCATGTGTAATTTCAACTTCTGGATATTATTTATG
AAATGAAAACACTGCGCACAAAGGACTTTGTACCTTGAGGGAGTTCTGAA
ACTTTTCCTCTTTAAACTCCATTTAACTAATCCCCCAGGCTTTCAATAAA
AAAAACCTGTGGCCATTAACAAAAAGCCCTTATTAGAAACCTGGAACCAG
GTTTCTATTTGTTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCATAGCATTGCAGTTTATTAGCTGAGAACAATAAAGTG
ATGTTCTGGGAATGAATGTAAATCAGGAGGAGCTGGCAAAGATTGAGAAT
GGTAGCTCTGACAACTTCAATTAGTCCTTGAAGGTCAGTTGGTAAATGAT
GGAAACAGAGAATAATTAACACTTCCCTGGCAAATCGCTGCAGAAATTGA
CTTAATCTTTATTTCTTCATCATTTTACTTATTGGCTTCAGCCTCATAAT
CCCCCTGAGTCCTAGAATTACAAGTGTACACTGCCATATTCCGCTCTTCT
CACATCTTACGAGAGGAAGGAGAAAATATCTTCCTAAGTAATACATCTAG
GGTCTGGATTGAACATGAAAACTTCTCTTGTAAAGGCTACTGGTTTTCAT
GTCTGGAGAGTGTAACTGCCTGCAAGGTGATAGAAAACCAGAAGACTTTA
CCTGTTGTACATAAGTCTTGGGAGTTATGTGTGTACAAGAAAACAAAATC
ATTTTCTCTCTGTGATAGCATTAGATGGTGGAAATTATTCATATTATGTT
AGGCAGGGTTTATTATCAGATAAAAAGCGATTGAAAAAATGTACATGTAT
ACCTAACATATTAATATATCTTAAAGAAATTTATTATATACGAGTTACTG
ATAAGAGCCGGGGAATCTACAGTGTTTGTCTACATAACATAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_h15.b1 MSMg01no384_h15.b1 CHROMAT_FILE:
MSMg01no384_h15.b1 PHD_FILE: MSMg01no384_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:47 2005
         (535 letters)



>mm_chr15_53037773_53038707
          Length = 935

 Score =  959 bits (496), Expect = 0.0
 Identities = 523/532 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtagaccaagctaaccttgaactcagagatccacctgcctctgtctca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ggaattcactctgtagaccaagctaaccttgaactcagagatccacctgcctctgtctca 775

                                                                       
Query: 64  cgagtgttgggaataaaggcccgggccaccactcccaggggaacaaatatttgttaacta 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 774 cgagtgttgggaataaaggcccgggccaccactcccagcggaacaaatatttgttaacta 715

                                                                       
Query: 124 aataccatgaaatttgtgtttctctaatacggcatttgaggaatctgattctctgttatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aataccatgaaatttgtgtttctctaatacggcatttgaggaatctgattctctgttatt 655

                                                                       
Query: 184 gctaccttaatttaaagagcaagttagcaacagagatataatataatgctgttggaatag 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gctaccttaatttgaagagcaagttagcaacagagatataatataatgctgttggaatag 595

                                                                       
Query: 244 aaggccagaccaccttaactccaacttgagaaagtcgttttgatgacttagtttccgctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 594 aaggccagaccaccttaactccaacttgagaaagtcgttttgatgacttagtttctgctt 535

                                                                       
Query: 304 gagcttatgtgtaaccagcttcagtgcccgttgtttccaaagctttggtggtgtacaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gagcttatgtgtaaccagcttcagtgcccgttgtttccaaagctttggtggtgtacaagg 475

                                                                       
Query: 364 acacggtgactcctgtattcaagtatgaactgaggcccggtttcgggtcttttgctagtc 423
           || ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 474 acgcggtgactcctgtattcaagtgtgaactgaggctcggtttcgggtcttttgctagtc 415

                                                                       
Query: 424 gagttacttttaggaggtttagggtcatgtgtagaactgcgataatgtagctcagcacat 483
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 414 cagttacttttaggaggcttagggtcatgtgtagaactgcgataatgtagctcagcatat 355

                                                               
Query: 484 cttttttatgttcatatcaatgatgcttcactctttgccaactcccatgtcc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cttttttatgttcatatcaatgatgcttcactctttgccaactcccatgtcc 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no384_h15.g1 MSMg01no384_h15.g1 CHROMAT_FILE:
MSMg01no384_h15.g1 PHD_FILE: MSMg01no384_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:47 2005
         (531 letters)



>mm_chr15_52836744_52837674
          Length = 931

 Score =  996 bits (515), Expect = 0.0
 Identities = 527/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagcattgcagtttattagctgagaacaataaagtgatgttctgggaatgaatgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagcattgcagtttattagctgagaacaataaagtgatgttctgggaatgaatgtaaa 260

                                                                       
Query: 61  tcaggaggagctggcaaagattgagaatggtagctctgacaacttcaattagtccttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaggaggagctggcaaagattgagaatggtagctctgacaacttcaattagtccttgaa 320

                                                                       
Query: 121 ggtcagttggtaaatgatggaaacagagaataattaacacttccctggcaaatcgctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcagttggtaaatgatggaaacagagaataattaacacttccctggcaaatcgctgca 380

                                                                       
Query: 181 gaaattgacttaatctttatttcttcatcattttacttattggcttcagcctcataatcc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gaaattgacttaatctttatttcttcatcattttacttattgacttcagcctcataatcc 440

                                                                       
Query: 241 ccctgagtcctagaattacaagtgtacactgccatattccgctcttctcacatcttacga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgagtcctagaattacaagtgtacactgccatattccgctcttctcacatcttacga 500

                                                                       
Query: 301 gaggaaggagaaaatatcttcctaagtaatacatctagggtctggattgaacatgaaaac 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 gaggaaggagaaaatatcttcctaagtaatacatccagggtctggattgaacatgaaaac 560

                                                                       
Query: 361 ttctcttgtaaaggctactggttttcatgtctggagagtgtaactgcctgcaaggtgata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctcttgtaaaggctactggttttcatgtctggagagtgtaactgcctgcaaggtgata 620

                                                                       
Query: 421 gaaaaccagaagactttacctgttgtacataagtcttgggagttatgtgtgtacaagaaa 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 gaaaaccagaagactttacctgttgtacataagtcttgggggttatgtgtgtacaagaaa 680

                                                              
Query: 481 acaaaatcattttctctctgtgatagcattagatggtggaaattattcata 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaaaatcattttctctctgtgatagcattagatggtggaaattattcata 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)