Query= MSMg01no384_m08.b1 MSMg01no384_m08.b1 CHROMAT_FILE:
MSMg01no384_m08.b1 PHD_FILE: MSMg01no384_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:08 2005
(484 letters)
>mm_chr15_41323703_41324590
Length = 888
Score = 901 bits (466), Expect = 0.0
Identities = 478/484 (98%), Gaps = 4/484 (0%)
Strand = Plus / Plus
Query: 5 gaattcctattttgagcagctctggaactcagctgctatggcaggacacctccgttgtac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctattttgagcagctctggaactcagctgctatggcaggacacctccgttgtac 264
Query: 65 ccttctgtaagggacctgccattactctctctccactgaccatttttccaacaaacacct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccttctgtaagggacctgccattactctctctccactgaccatttttccaacaaacacct 324
Query: 125 tttaatagctcaagagtttgtgttgttgttagctaacctactaaaactgagaaactaggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttaatagctcaagagtttgtgttgttgttagctaacctactaaaactgagaaactaggt 384
Query: 185 ttgcattcatctatacaaagtatatccaaaaaccctgtctttcacttgtaaattcggata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgcattcatctatacaaagtatatccaaaaaccctgtctttcacttgtaaattcggata 444
Query: 245 ctagaaaaaaaa----caaagagaatgaactagttatataactaatcaaattagatgagg 300
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctagaaaaaaaaaaaacaaagaaaatgaactagttatataactaatcaaattagatgagg 504
Query: 301 aacaataaggttaatatatgccaagaggccacagcagataaacatggctgtattaatcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacaataaggttaatatatgccaagaggccacagcagataaacatggctgtattaatcca 564
Query: 361 cagtagtcccttttgcataatttatgtatcctgagtatctatactgcttatatacctacg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagtagtcccttttgcataatttatgtatcctgagtatctatactgcttatatacctaca 624
Query: 421 aagaattctgccctaaatgtaatgaaatcaatcctattaattgaaagaaaatactatagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagaattctgccctaaatgtaatgaaatcaatcctattaattgaaagaaaatactatagc 684
Query: 481 cttt 484
||||
Sbjct: 685 cttt 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 888
Length adjustment: 10
Effective length of query: 474
Effective length of database: 878
Effective search space: 416172
Effective search space used: 416172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_m08.g1 MSMg01no384_m08.g1 CHROMAT_FILE:
MSMg01no384_m08.g1 PHD_FILE: MSMg01no384_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:08 2005
(561 letters)
>mm_chr15_41510230_41511189
Length = 960
Score = 650 bits (336), Expect = 0.0
Identities = 345/348 (99%), Gaps = 1/348 (0%)
Strand = Plus / Minus
Query: 1 tggcgtatcactactggtatatacaatgtatatatacagtagtctatacagtggtacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tggcgtatcactactggtatatacaatgtatatatacagtagtctatacagtggtacagt 288
Query: 61 gaaacagtatggtggctcttcaaaaccttaaggcatcaccaagaaaactgaaagatgaca 120
|| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 287 gaga-agtatggtggctcttcaaaaccttaaggcatcaccaagaaaactgaaaggtgaca 229
Query: 121 cagttattttcttaactgtattatactgataacagcattctttaaatagcctgaaggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 cagttattttcttaactgtattatactgataacagcattctttaaatagcctgaaggaag 169
Query: 181 aagcagtcaaattgtccatcaagagattagtacaaattcagtatgctatagggtattggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 aagcagtcaaattgtccatcaagagattagtacaaattcagtatgctatagggtattggt 109
Query: 241 catcaatctttctaattctgtggccctttaatatagtttcttatgttgtggtgaacccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 catcaatctttctaattctgtggccctttaatatagtttcttatgttgtggtgaacccca 49
Query: 301 aacataaaattattttttgtggctgttccatatctgtaattttgctac 348
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 aacataaaattattttttgtggctgttccatatctgtaattttgctac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 960
Length adjustment: 10
Effective length of query: 551
Effective length of database: 950
Effective search space: 523450
Effective search space used: 523450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
