Query= MSMg01no385_k03.b1 MSMg01no385_k03.b1 CHROMAT_FILE:
MSMg01no385_k03.b1 PHD_FILE: MSMg01no385_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:15 2005
(278 letters)
>mm_chr15_9057315_9057991
Length = 677
Score = 462 bits (239), Expect = e-135
Identities = 263/271 (97%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 8 gaattcagagatgttaccccctgctctgcttctttgcaggtgtctcctgggactcccttc 67
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattcagagatg-gagaccctgctctgcttctttgcaggtgtctcctgggactcccttc 419
Query: 68 cagatgagctgctccttgggatcttttcctgtctgtgcctccctgagctgctgagagtct 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cagatgagctgctccttgggatcttttcctgtctgtgcctccctgagctgctgagagtct 359
Query: 128 cgggcgtttgcaagaggtggtaccgcctctcgtgagtattctttacccttctgggcatag 187
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 358 cgggcgtttgcaagaggtggtaccgcctctcgtgagtattcttcagccttctgggcatag 299
Query: 188 agaggggagggaaggaagagggttatgtgctcatgtgagtctgaactcacgtagaacata 247
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 298 agaggggagggaaggaagagggttatgtgctcatgtgagtctgaactcacatagaacata 239
Query: 248 gctgaacctaagcaaatccagccccttttta 278
|||||||||||||||||||||| ||||||||
Sbjct: 238 gctgaacctaagcaaatccagctccttttta 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 677
Length adjustment: 9
Effective length of query: 269
Effective length of database: 668
Effective search space: 179692
Effective search space used: 179692
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no385_k03.g1 MSMg01no385_k03.g1 CHROMAT_FILE:
MSMg01no385_k03.g1 PHD_FILE: MSMg01no385_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:15 2005
(461 letters)
>mm_chr15_8918060_8918920
Length = 861
Score = 799 bits (413), Expect = 0.0
Identities = 451/467 (96%), Gaps = 6/467 (1%)
Strand = Plus / Plus
Query: 1 ttgaccagtagaaaccctggcatgcttttcaaggagtaaatgttttacatgcgaggtgag 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 195 ttgaccagtagaaaccctggcatgcttttcgaggagtaaatgttttacatgcgaggcgag 254
Query: 61 a------cgtgcctctgtgttctttccaagtaacttctgaagacagtttttgatgtctgg 114
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atctgcgcgtgcctctgtgttctttccaagtaacttctgaagacagtttttgatgtctgg 314
Query: 115 ctaagacaaactgcgctagtggtccccgagtcacagccagatcgttggtaccatgtctac 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctaagacaaactgcgctagtggtccccgagtcacagccagatcgttggtaccatgtctac 374
Query: 175 aacacaaaggaaagacgacagccacctgttcaccagttcgtgcacgcgtcagctgcaggt 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aacacaaaggaaagacgacagccacctgttcaccagttcgtgcacgcgtcagctgcaggt 434
Query: 235 gcaggaggatcagcaacagcaaggtgggtctagagagcaaagtcctgcgctctgtgactt 294
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcaggaggatcggcaacagcaaggtgggtctagagagcaaagtcctgcgctctgtgactt 494
Query: 295 tctgaccatttgtatgtctggggaagggtgggctggtgaagagcctggactctctgggag 354
||||||| |||||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct: 495 tctgaccttttgtatgtctggggaagggtgggctggtgaagagcttgcaccctctgagag 554
Query: 355 gaagaataataggctggacagtcggttcccgtggcctcgatgttgatttaaaggattatc 414
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 555 gaagaataataggctggacagtaggttcccgtggcctcgctgttgatttaaaggattatc 614
Query: 415 atttcttgaaagacttttgagaatacatattccttggaaacaggtac 461
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atttcttgaaagacttttgagaatacatattccttggaaacaggtac 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
