BAC Information

Click to search

BAC

Clone NameMSMg01-385N11
Chromosome15 (Build37)
Map Location 63,084,399 - 63,084,771
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040430, Tsg101-ps
Downstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385N11.T7 (MSMg01no385_n11.b1)MSMg01-385N11.TJ (MSMg01no385_n11.g1)
ACCAG488947AG488948
length765757
length of high quality
(start - end)		505 (27 - 531)373 (64 - 436)
definitionCHROMAT_FILE: MSMg01no385_n11.b1 PHD_FILE: MSMg01no385_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:31 2005CHROMAT_FILE: MSMg01no385_n11.g1 PHD_FILE: MSMg01no385_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGTTTAGCTCTGA
GCCCCATTTTTAATGGGGTTATATGATTTTCTGGAGTCCACCTTCTTGAG
TTCTTTATATATGTTGGATATTAGTCCCCTATCTAATTTAGGATACGTAA
AGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTGTTGACAGTGTCT
TTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCACATTTGTCAATTCT
CAATCGTACAGCACAAGCCATTGCTGTTCTCTTCAGGAATTTTTCCCCTG
TGCCCATATATTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGT
GTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGT
ACAAGGAGATAGGATTGGATCGATTGGCATTCTTCTACATGTTAACAACC
AGTTGTGCCAACACCATTTGTTGAAAATGCTGTCTTTCTTCCACTTGATG
GTTTTAGCTCCCTTGTCGAAGATCACGTGACCATAGGTGTGTGGGTTCAT
TTCTCAGTCTTCCATTCTATTCCACTGGTCTAATTGTCTGCCACTATACC
AGTACCATGCAGTTTTTTATCACAATTGCTCTGTAATAAACTTTTATGTC
TGGCATCGTGATTCCTCAAAGGGCCTTTTTTCTTGATCAAAATTTTTGGA
TTCCTTAGTTTTGTGTTTTCCCCATTAAGGTGCAGATTGTTCTTTTCTAT
CCTTTTAAAATATTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTATGAGTGATTGAGACAGTTTGGCTCCATGCCGTAGA
GATGTACATTCTTTCTTGGCAGGCTGGGACCATTAGTAAAACGGAGAGTG
ATAGACAAAGGAAGAGCTATGTCTGTGCAAGCCTGGGCTGCAGTGTTTGC
AAATCCATCTCCCTTTCTTGCTAAGCAAGCATTGAGCTTCCTGCTTCTGG
TTTGGATCTGAGTGGAAGTTCCCAAATTCCAACAGGAAGGCCATACTTGT
GGTCTCCCTCCCTCACTGAAACCTGAAGCAATGGAATTTCATGTGGGTGG
CGTTTTCTCAAGAGATTTCCAGCTGCAATCCCAGAGCAGAGGTAAGCCAC
TAGATAGTTATTAGACCTAAGGCAATTCTGTCTCTTTGCTTTTCTAAGAT
TCCATACTAACTTGCCAAGTATGGGCTTAATAACTGCCAAGAGTTTCTGC
GGGGAGCTGTATGAATTTTAAAAAAAGAATAAGTATCTCCTTGGACTTAA
GTTGGCCTTGGAAAAAATTTCCCCTATAAAGCCGGGCAAAAAAAAACCAC
CCCCCCCCCTTCTTTTTATACCCCATAATTTATTTTTTTCAAAGCTTGGG
GCCCCCTTTGAATATGGCCACTAATTTGGCTTTCTATTTTACAAAAAGGG
TTTTTCTTTGCAAAATATTTTTTCAACTTCCCCTGGTAACATATATTTTC
TCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_n11.g1 MSMg01no385_n11.g1 CHROMAT_FILE:
MSMg01no385_n11.g1 PHD_FILE: MSMg01no385_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:31 2005
         (373 letters)



>mm_chr15_63084199_63084971
          Length = 773

 Score =  706 bits (365), Expect = 0.0
 Identities = 371/373 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgagtgattgagacagtttggctccatgccgtagagatgtacattctttcttggcagg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 573 tatgagtgattgagacagtttggctccatgccatagagatgtacattctttcttggcagg 514

                                                                       
Query: 61  ctgggaccattagtaaaacggagagtgatagacaaaggaagagctatgtctgtgcaagcc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctgggaccattagtaaaatggagagtgatagacaaaggaagagctatgtctgtgcaagcc 454

                                                                       
Query: 121 tgggctgcagtgtttgcaaatccatctccctttcttgctaagcaagcattgagcttcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgggctgcagtgtttgcaaatccatctccctttcttgctaagcaagcattgagcttcctg 394

                                                                       
Query: 181 cttctggtttggatctgagtggaagttcccaaattccaacaggaaggccatacttgtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttctggtttggatctgagtggaagttcccaaattccaacaggaaggccatacttgtggt 334

                                                                       
Query: 241 ctccctccctcactgaaacctgaagcaatggaatttcatgtgggtggcgttttctcaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctccctccctcactgaaacctgaagcaatggaatttcatgtgggtggcgttttctcaaga 274

                                                                       
Query: 301 gatttccagctgcaatcccagagcagaggtaagccactagatagttattagacctaaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gatttccagctgcaatcccagagcagaggtaagccactagatagttattagacctaaggc 214

                        
Query: 361 aattctgtctctt 373
           |||||||||||||
Sbjct: 213 aattctgtctctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |