Query= MSMg01no386_f10.b1 MSMg01no386_f10.b1 CHROMAT_FILE:
MSMg01no386_f10.b1 PHD_FILE: MSMg01no386_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:08 2005
(561 letters)
>mm_chr15_78911668_78912628
Length = 961
Score = 870 bits (450), Expect = 0.0
Identities = 523/562 (93%), Gaps = 28/562 (4%)
Strand = Plus / Minus
Query: 1 ttctcttcagaaaaccattctaacccagagcccagtgccccagagccccgctggagacac 60
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 819 ttctcttcagaaaaccattctaacccagagcccagtg-----------cgctggagaca- 772
Query: 61 acgaacactggccacagccatggccatggccacggtcatggccactgcctgtgggaatta 120
||||| || || |||||||| ||||| |||||||||||||||||||||
Sbjct: 771 -----------ccaca-cc--ggtcatggccaaggtcacggccactgcctgtgggaatta 726
Query: 121 cttctttgtggctacggctgaggctggacaaacacctggtagataaactcatcgatgatg 180
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 725 cttctttgtggctatggctgaggctggacaaacacctggtagatgaactcatcgatgatg 666
Query: 181 tcccagagccactggttggggagttcaaggggcgcaggtccatccgcatctacagagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tcccagagccactggttggggagttcaaggggcgcaggtccatccgcatctacagagaga 606
Query: 241 acaaggatattttagtccaggcaggagctcgcccgctggagcagggctgcagagcaacca 300
||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 605 acaaggagatcagagtccaggcaggagctcgaccgctggagcagggctgcagagcaacca 546
Query: 301 tcacagtctccctcatcaaagactaaaccaccaaacccc-cttcttcctacttgcacatt 359
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 545 tcacagtctccctcatcaaagactaaaccacc-aaccccgcttcttcctacttgcacatt 487
Query: 360 gaaatctggctaaaaaagagcaagctaggtgctcaaatacactcctttggccaaatctga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaaatctggctaaaaaagagcaagctaggtgctcaaatacactcctttggccaaatctga 427
Query: 420 gacttactgaggatgtagttgaagagattgcagtagttgtaataagattcgaacctctgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gacttactgaggatgtagttgaagagattgcagtagttgtaataagattcgaacctctgt 367
Query: 480 tctaaggagggacccccctggaaagagaacaggatgttagggcacataagtactttcctc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tctaaggagggacccccctggaaagagaacaggatgttagggcacataagtactttcctc 307
Query: 540 gcagctcaccgccatggctgag 561
||||||||| ||||||||||||
Sbjct: 306 gcagctcactgccatggctgag 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_f10.g1 MSMg01no386_f10.g1 CHROMAT_FILE:
MSMg01no386_f10.g1 PHD_FILE: MSMg01no386_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:08 2005
(454 letters)
>mm_chr15_78752359_78753212
Length = 854
Score = 855 bits (442), Expect = 0.0
Identities = 451/454 (99%)
Strand = Plus / Plus
Query: 1 aaaagcaatggactgagctgtttagaattttcaagacagcacaacagccaagccggggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagcaatggactgagctgtttagaattttcaagacagcacaacagccaagccggggag 260
Query: 61 gtcaaagctgcccttctacccttcataaaaggctctcctcagccccagctccctgagaga 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaaagctgcccttctacacttcataaaaggctctcctcagccccagctccctgagaga 320
Query: 121 gcacagccaagtaccctccctctctggtttccacatccttaaagtgcatcagaagatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacagccaagtaccctccctctctggtttccacatccttaaagtgcatcagaagatatg 380
Query: 181 ggggagcaggccatggcatctctggggtccctccctgttctgacttcaagaactctgtgt 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ggggagcaggccatggcatctctggggtccctccctgctctgacttcaagaactctgtgt 440
Query: 241 tggagccagcttggtgggtgctgtgcatggtacccatgagctccgtggctccctcccagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggagccagcttggtgggtgctgtgcatggtacccatgagctccgtggctccctcccagg 500
Query: 301 gctggccgcaagcagtacagactgtcagggaggggtaggagttggagggtcaggaaggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctggccgcaagcagtacagactgtcagggaggggtaggagttggagggtcaggaaggac 560
Query: 361 cttgctggctgggacctgtatggaaaagctaaggccagatccaagggctgggcttctgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgctggctgggacctgtatggaaaagctaaggccagatccaagggctgggcttctgaa 620
Query: 421 cagaattccagaggactccaatggttactgtggg 454
|||||||||||||||||||||||| |||||||||
Sbjct: 621 cagaattccagaggactccaatggctactgtggg 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
