BAC Information

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BAC

Clone NameMSMg01-386O18
Chromosome15 (Build37)
Map Location 49,293,209 - 49,293,520
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneLOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386O18.T7 (MSMg01no386_o18.b1)MSMg01-386O18.TJ (MSMg01no386_o18.g1)
ACCAG489777AG489778
length760739
length of high quality
(start - end)		690 (71 - 760)312 (67 - 378)
definitionCHROMAT_FILE: MSMg01no386_o18.b1 PHD_FILE: MSMg01no386_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:50 2005CHROMAT_FILE: MSMg01no386_o18.g1 PHD_FILE: MSMg01no386_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGAATCCGCGG
AATTCTTTGTTTAGATCTCTACCTAATATTTTAATAGAGTTGTATGTTTT
TTCTGGAATCCAACTTCTTGAGTTCTTTATATATATTGGATATTAACTCC
CCCTATTGGATTTAAGATTGGTAAAGATACTTTACCAATCTGTTGGCTGC
CTTTTTATCTTAGTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAACTT
TAGGAGGTCCCATTTGTCCATTCTTGATCTTATAGCACAAGTCATTGCTG
TTCTATTCAGGATTTTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCC
CACTTTCTCTTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCTT
TGATCCACTTAGACTTGAGCTTTGTGCAAAGAGATAAGAATGGATCAGTT
CGCATTCTTCTCCATACAAACCACCAGTTCAACTATTTGTTGAAGATGCT
GTCTTCCTTCCACTGGAAGGTTTTAGCTCCTTTGTCAAAGATCAAGTGAT
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTGTTCCAACGAGGT
AGCTGTTTGTTGCTGTACCAGAACCATGCACTTTTAATCACAATTGCTCT
ATAGTACAGCATGAGGTTGGAGACGGTGATTCCGCCAGAAGTTCGATTAT
TGTTGANNATAATTTTAGCTATGCTAGAATTTTTGTTATTCCAGATGAAT
TTGTAAATTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAATCACTCTAAAATTTGGTTTATTTTAGACACT
TGTCACAGAAACAGGAGATGATCCTGACATGTGAAGCTCCTCTTTCATGG
CAGAGCCATTACAGTGCTGACTGGGAAATGGAGAAGACAATGCTAATGGA
TCTGGGAGAATTATTAGACCATTCATACAATGACATGCTGAAATATGTCA
AAATGTAATGTCCTGACTCTTATTTCTGTAGACTAAATGTTGAAATATTG
GCAGTCATTCATATGTACCTCTAGGTTTATCTCTGCTTTTCGNNACTTAA
AAATTACTTCAATTGATGCATTAAGAGAACCTGGTCGACATATAGCCCCT
GATAAATGGCTCCTGCCATTAGAGAGATTTAATTAAGAACTGGGATAATA
TTGGCACTGAGATAAAACTGTTAGATACATTTTAGTGNTGGCCCTTCTAT
TTTTTAAACNNNNAAATTTCCCCCTTAATTGGGAAAATTTTAAAACCTTT
TCCTAAGGGAAAAACCAAAAAATTTTACCCTTTTTTTTTTTTAAAAAAAA
GGGGAAAAAAACCCCCCCACAGGGGGGGGGGTTTCTTTTTTAAATAAATT
ATCTTAATTTTTTTTTTTCCNCCCCCCACTTTTTTTTTTTTTTAAAAAGA
AAGCCACCTTTTTTTTTTTTTTTTATTCNACATAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_o18.g1 MSMg01no386_o18.g1 CHROMAT_FILE:
MSMg01no386_o18.g1 PHD_FILE: MSMg01no386_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:50 2005
         (312 letters)



>mm_chr15_49293009_49293720
          Length = 712

 Score =  592 bits (306), Expect = e-173
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatcactctaaaatttggtttattttagacacttgtcacagaaacaggagatgatcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatcactctaaaatttggtttattttagacacttgtcacagaaacaggagatgatcctg 260

                                                                       
Query: 61  acatgtgaagctcctctttcatggcagagccattacagtgctgactgggaaatggagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgtgaagctcctctttcatggcagagccattacagtgctgactgggaaatggagaag 320

                                                                       
Query: 121 acaatgctaatggatctgggagaattattagaccattcatacaatgacatgctgaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatgctaatggatctgggagaattattagaccattcatacaatgacatgctgaaatat 380

                                                                       
Query: 181 gtcaaaatgtaatgtcctgactcttatttctgtagactaaatgttgaaatattggcagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaaaatgtaatgtcctgactcttatttctgtagactaaatgttgaaatattggcagtc 440

                                                                       
Query: 241 attcatatgtacctctaggtttatctctgcttttcgnnacttaaaaattacttcaattga 300
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 441 attcatatgtacctctaggtttatctctgcttttcggtacttaaaaattacttcaattga 500

                       
Query: 301 tgcattaagaga 312
           ||||||||||||
Sbjct: 501 tgcattaagaga 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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