Query= MSMg01no388_l15.b1 MSMg01no388_l15.b1 CHROMAT_FILE:
MSMg01no388_l15.b1 PHD_FILE: MSMg01no388_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:07 2005
(491 letters)
>mm_chr15_24059437_24060324
Length = 888
Score = 919 bits (475), Expect = 0.0
Identities = 483/487 (99%), Gaps = 3/487 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtaatgaccagatcttagaatgtcaatcactatctacataagtagctagggtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaattcagtaatgaccagatcttagaatgtcaatcactatctacataagtagctagggtc 629
Query: 65 cagaaagattagggaaaatgttgttatttccaatatgttagtagaaaataggatgcatca 124
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cagaaagattagggaaaa---tgttatttccaatatgttagtagaaaataggatgcatca 572
Query: 125 ggaatagatcttgagtcaccatagcattcactgcctgtaggtataggagtgtctaagctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggaatagatcttgagtcaccatagcattcactgcctgtaggtataggagtgtctaagctt 512
Query: 185 gtgcttcccatctacggcaacaccattgaggattgcaggtatgcagaccttactgaggac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtgcttcccatctacggcaacaccattgaggattgcaggtatgcagaccttactgaggac 452
Query: 245 cagctatgctccagtgagaacctaaaggaccatatggttatcgcattggacttctgccat 304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 451 cagctatgctccagtgagaacctgaaggaccatatggttatcgcattggacttctgccat 392
Query: 305 gaggaaattgtcccccagatcaaggagggacagtgggtcctgattgtggccatggcaaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaggaaattgtcccccagatcaaggagggacagtgggtcctgattgtggccatggcaaca 332
Query: 365 gccctcagggcatcatgaagcagctggagggtatcttagaagaagccacatagctgaaac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gccctcagggcatcatgaagcagctggagggtatcttagaagaagccacatagctgaaac 272
Query: 425 tatgaccgggcattcccattgttgtgacttgctccaaaacttgaagcccatcaaacccat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tatgaccgggcattcccattgttgtgacttgctccaaaacttgaagcccatcaaacccat 212
Query: 485 gcagttc 491
|||||||
Sbjct: 211 gcagttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 888
Length adjustment: 10
Effective length of query: 481
Effective length of database: 878
Effective search space: 422318
Effective search space used: 422318
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_l15.g1 MSMg01no388_l15.g1 CHROMAT_FILE:
MSMg01no388_l15.g1 PHD_FILE: MSMg01no388_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:07 2005
(513 letters)
>mm_chr15_23917576_23918488
Length = 913
Score = 967 bits (500), Expect = 0.0
Identities = 513/522 (98%), Gaps = 9/522 (1%)
Strand = Plus / Plus
Query: 1 attaagagtatgtaaatagaagaaaacggggaaatggttctataatgtattttattacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaagagtatgtaaatagaagaaaacggggaaatggttctataatgtattttattacct 260
Query: 61 ttctgaattagtttgtttcaaatttaatcaccttctcttaacatacaaaacgacaaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgaattagtttgtttcaaatttaatcaccttctcttaacatacaaaacgacaaattt 320
Query: 121 cttatcttatgcacaaatgtataatgctctcatgcaacattgtcccatcttgtgattggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttatcttatgcacaaatgtataatgctctcatgcaacattgtcccatcttgtgattggc 380
Query: 181 atagttctcagcacaaagagtaatttttaatcttcattaaatacacactcccctcccctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagttctcagcacaaagagtaatttttaatcttcattaaatacacactcccctcccctc 440
Query: 241 taccatggaattaaagttacaggtggttattatttaccatataggtgctgggaattaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccatggaattaaagttacaggtggttattatttaccatataggtgctgggaattaaaa 500
Query: 301 gctgattctctcaaagaatacaagtgctcttaaatgagttatcttgccagatctaaataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgattctctcaaagaatacaagtgctcttaaatgagttatcttgccagatctaaataa 560
Query: 361 ataaacagaaaaaa-atatatatatataacaaaagataatccactagttttaacccctaa 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaacagaaaaaatatatatatatataacaaaagataatccactagttttaacccctaa 620
Query: 420 ttaaacaaatacagttgtattaaaggtatgcacacacacacacacacaca--------ta 471
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ttaaacaaatacagttgtattaaaggtatgcacacacacacacacacacacacatatata 680
Query: 472 tatatgtatcagcctagaaagacattattatgaacatgatat 513
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatatgtatcagcctagaaagacattattatgaacatgatat 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
