BAC Information

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BAC

Clone NameMSMg01-389L08
Chromosome15 (Build37)
Map Location 23,149,654 - 23,149,762
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863, LOC666989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389L08.T7 (MSMg01no389_l08.b1)MSMg01-389L08.TJ (MSMg01no389_l08.g1)
ACCAG491899AG491900
length767758
length of high quality
(start - end)
---109 (219 - 327)
definitionCHROMAT_FILE: MSMg01no389_l08.b1 PHD_FILE: MSMg01no389_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:24 2005CHROMAT_FILE: MSMg01no389_l08.g1 PHD_FILE: MSMg01no389_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCAGAGGA
TCCGCGGAATTCCACCTAATACCCAATAACTTGAATCTGTTCTAGGAGAA
AATAAGGACAATTTAGAGATATATGAATATTTTCTGTGCAGGAAAACTAT
AGGGCAGATATAAAGGCCAATAATTTGCGAATTGGACATCATGAAATTCA
AGAGCTTGTGTACAGCACACACACACACACACACACGCACACACGCACGC
ACACACACGATCTCACACGCACGCGCGAACTAACTAAATAGAGAGGTATC
TTATAGAATGGGAAATGATCATTCCCTCCTACTTGTCTGACAGAAGGCTA
GTGTACAAATACAAATAATTTAACATACCTAACCACCAATAAGCACCAAT
AAGACAAATATCCCACTTACCATCACGTATGCAACTAAGACAGTGACCTC
ACTGCACAAAACAATGCTGGACAATAATCTTCATACATCTATCGCCCTGT
TGCTCGTCTCTTCCCCTACAGGCCTACTCTTCCTTCCCTCCTCCAGTCAC
CTATATTTCCCCCTTCTGCTTCCCCCCACTCCCCTCACCTTCCCCCTTCC
CTCCCTCCCCCCCTACTTTTATTCCCCCCTTTCCCCGACCCCTCCCCTCT
CCCTTTTTTCCCCTTATTTTTCCCTTCCCCTTTGTCCCGCCCCATCCCCC
TCCCCCTCCTTCCCCCTTTCCTCCCCCCCTTCCTACCCTTTCCCTCCCCC
CTCCCCTCCCCCTTCCC
NNNNCCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTCAGCACATTACAGAGA
GGCCAAATGCTTAACAAGTGTTCACCTAAGGCGGGAAGTTCGCACAAGAA
AGGAAAGATTTTTAGAAATCCTAGTGAAGGATTACTAAACTAAGACGCTC
TTCTGAGCAGAAGAGCTAGGAGAAGGGGAGGGGCCCAAGGCTATCAGAGC
CTCATATAGATGTCGGTTCACAACCGGAATTGCATGAAATAGGGAGGCTT
ATAAAGGATAATAGTGGTTTCAAACTATCAGATGATAGGGAGATTGAAGT
GACAGCAAAGGTAATTGCAGAGGCGAATAGGAGGAAATTTGATAATCAAT
AACGTCTATCAAAGTATGACTAAATGGCAGAAGTAAGACATGATGCAATC
ATGTATATTCTGAAAATAAGGGAATCTGTGTTGCATGTTGAAAGCAGGGT
AAAGCAGACCGTATGGGTTGACCATGATTACTGGATGAAAAAAGAAGAAT
GAACTTACGATTATTCAGTTGATAGATGAAGTATGAGACGGACGTCCCGA
GGGATTCTGAAACAATTTTTGGATATCTTAATTGAAATATCCCCATGTGG
AGTCTCAGAGGAATAGAAGAACTTTCCCTGGATATTCTGGAGTTCCCAAA
AAATATTTGATGCCTTTTATTTTATTAAGCCAAAGAATCCCTCCCTATGG
AGTAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_l08.g1 MSMg01no389_l08.g1 CHROMAT_FILE:
MSMg01no389_l08.g1 PHD_FILE: MSMg01no389_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:24 2005
         (109 letters)



>mm_chr15_23149454_23149962
          Length = 509

 Score =  195 bits (101), Expect = 5e-55
 Identities = 107/109 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagaaggggaggggcccaaggctatcagagcctcatatagatgtcggttcacaaccgga 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 309 ggagaaggggaggggcccaaggctatcagagcctcatatagatgtcagttcacaaccgga 250

                                                            
Query: 61  attgcatgaaatagggaggcttataaaggataatagtggtttcaaacta 109
           | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aatgcatgaaatagggaggcttataaaggataatagtggtttcaaacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)