BAC Information

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BAC

Clone NameMSMg01-390D18
Chromosome15 (Build37)
Map Location 45,839,598 - 45,839,977
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnv1, LOC100039389, EG432951
Downstream geneLOC100039438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390D18.T7 (MSMg01no390_d18.b1)MSMg01-390D18.TJ (MSMg01no390_d18.g1)
ACCAG492298AG492299
length741744
length of high quality
(start - end)
529 (81 - 609)588 (81 - 668)
definitionCHROMAT_FILE: MSMg01no390_d18.b1 PHD_FILE: MSMg01no390_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:05 2005CHROMAT_FILE: MSMg01no390_d18.g1 PHD_FILE: MSMg01no390_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGAGCATC
CGCGGAATTCATTGTTTTTAATAGCTAAGTAGTACTCCATTGTGTAAATG
TATCACATTTTCTGTATATATTATTCTGTTGAGGGACATATATCAACATA
ATTCACTATATAAAGTAACTGAAAGACAAAAACCACATGATCATCTCATT
ATACACTGAGAAATCATTTGACAAAATCCAACACCCATTCATGATAAAAA
GTCTTGGAAATATCAGAAATTCAAGGCCCATACCTAAACATATTAAAAGC
AATATACAGCAAACCAGTAGCCAACATCAAACTAAATGAAAGGAAACTTG
AAGCAATCCCACTAAAATCGGAGACTAGACAAGGCAGCCCAGTCTCTCTC
TACCTATTCAGTACAGTATATGAAGTCCTAGCCAGAGCAATTCGACAACA
AAAGAAGATCAAGGGAATACAAATTGGAAAGGAAGAAGTCAAAATACCAC
ATTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACC
AGAGAACTCCTAAATCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAA
AATTAACTCAAACAAATCAGTGAACTTTCTCTATACAGAGGATAAACAGG
CTGAGAAAGAAATTAGGGAAACAATACCCTTCTCACTAGTCACCAATAAT
ATAAAATAACTTTGTGTGACTTTAGGCCAGCGAAAGATCTG
NNNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATACCACAAGGCTCACAG
TTGAGTACCCTCAGCACTAATACCTGGTCTAACTGAGGATCCTTCACCAT
GGACCAGAAAACAAAAGCCCTTTCATCCTTCTAGACACACTTCTCTGTTC
TGTCCCCAACTGCCCCTGGAAGTAGTTCTTGTGCTCGAGAAACCCCCAGC
GCAACCACAGCCAGAAGCAGCTTGGCTCCTAGAAGATTGGCCACACCCAG
GCTCACAGATCAGGCACTCCAGACCGCTATCCACACTCAGAGACAGTCTG
ACATTAAGAGATCCAACATAACAAGGCTCACAGTAGAGTCAGGCTCTAGT
CAGTAACAGCAAGACCAGTCAACACCAGAGAAAACCAGATGGTGAGAGGT
AAGTGGACGAATATAAGCAACAAAAAGCAACATCAAAACAACTTGGCAAC
ATCAAAACCCAATTCTCCCACCAGAGAAAGCCCTGGATATTCTAAAACAA
CTGAAAAGCAAGATTCTGATGTAATATCCCATCTCATGAATATGATAGAA
AATCTTAAAGAGGATATAAATTACTCCCTTAAAGAAATACAGAACACAGA
TAACAAGTAGAAGCCCTTAAAGAAGAAACACATAAATCCCTCAAGTAAAC
ATGGGAAAACACAATAAAACAGGAGAAGGTATTAAATAAAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_d18.g1 MSMg01no390_d18.g1 CHROMAT_FILE:
MSMg01no390_d18.g1 PHD_FILE: MSMg01no390_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:05 2005
         (588 letters)



>mm_chr15_45839598_45840585
          Length = 988

 Score =  629 bits (325), Expect = 0.0
 Identities = 367/381 (96%), Gaps = 2/381 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgataccacaaggctcacagttgagtaccctcagcactaatacctggtctaactgaggat 60
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 380 tgataccacaaggctcacagttgagtaccctcagcactaataactggcctaactgaggat 321

                                                                       
Query: 61  ccttcaccatggaccagaaaa-caaaagccctttcatccttctagacacacttctctgtt 119
           | |||||||||||||||||||  |||| ||||  ||||||||||||||||||||||||||
Sbjct: 320 ctttcaccatggaccagaaaatgaaaa-ccctcccatccttctagacacacttctctgtt 262

                                                                       
Query: 120 ctgtccccaactgcccctggaagtagttcttgtgctcgagaaacccccagcgcaaccaca 179
           ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 261 ctgtccccaactgcccctggaagtagttcttgtgctccagaaacccccagtgcaaccaca 202

                                                                       
Query: 180 gccagaagcagcttggctcctagaagattggccacacccaggctcacagatcaggcactc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccagaagcagcttggctcctagaagattggccacacccaggctcacagatcaggcactc 142

                                                                       
Query: 240 cagaccgctatccacactcagagacagtctgacattaagagatccaacataacaaggctc 299
           |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 141 cagacccctatccacactcagagacagtctgacactaagagatccaacttaacaaggctc 82

                                                                       
Query: 300 acagtagagtcaggctctagtcagtaacagcaagaccagtcaacaccagagaaaaccaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  acagtagagtcaggctctagtcagtaacagcaagaccagtcaacaccagagaaaaccaga 22

                                
Query: 360 tggtgagaggtaagtggacga 380
           ||||||||||||||| |||||
Sbjct: 21  tggtgagaggtaagtagacga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)