BAC Information

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BAC

Clone NameMSMg01-390F19
Chromosome15 (Build37)
Map Location 90,149,645 - 90,150,073
singlet/doubletsinglet
Overlap genenone
Upstream geneAdm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b
Downstream geneCpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390F19.T7 (MSMg01no390_f19.b1)MSMg01-390F19.TJ (MSMg01no390_f19.g1)
ACCAG492392
length762768
length of high quality
(start - end)
---430 (82 - 511)
definitionCHROMAT_FILE: MSMg01no390_f19.b1 PHD_FILE: MSMg01no390_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:15 2005CHROMAT_FILE: MSMg01no390_f19.g1 PHD_FILE: MSMg01no390_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGGCTATGAAACTGGACCAGGGA
TCTTAATAACGN
NTTGTTACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGCCCAGGGTCGGCTCA
AGGACTACCTAGGGCATTGGTGAAGGCCAGGAAGCAAAGTTCGATTTTGC
TTAGGTATTTGGCAAGTCATTGCTCAGAGGCACCTACAATAAAACAATAC
TGAAAGGAAGCACACAGATCCATTTGCAAGGACAAAATTGGAGCATACGT
GCTATGGAATGCCACAGTTCCAGGAGACTAAGTTTCCATGAAACTCTTTG
CCTCAGGACTGCATCCAGGCTTTTGGCCTGTCATGCATGTCACTACTGGA
GTGGATGTAGCAATGAAGCCAATGAAGGGAAAGTCAGGGAAACTCAGCTA
TTCACCCACTAGTGTTACAGGGTTAAGACATATGCAATGAATGTTGGCGT
TTAATGAGAAGTCCTTACTGTAAATTGCCCTTTTCTGGTATCTGTGAAGA
TAACAGAAACATACGTATACAATCACACAGACACGTTCACACCCATAAAA
CATAAATCTTCCATACAAGGGTATTCCTTACTTTACGTGACTACTGACCA
ATAAATGTCATTGTGCACTCACCCCTCCATTAAGACCCCCCCAGAGAAGT
ATGAACCTTACCCCTTTCCCCCGTTTATTGTAAAAATTTTTAACTATTTA
CAGGGCGTTGTGGTCGGCCAATCCTCCCCCCCACCGGTTATCATGTTTCA
CGACCTTTTTTAATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_f19.g1 MSMg01no390_f19.g1 CHROMAT_FILE:
MSMg01no390_f19.g1 PHD_FILE: MSMg01no390_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:15 2005
         (430 letters)



>mm_chr15_90149445_90150273
          Length = 829

 Score =  723 bits (374), Expect = 0.0
 Identities = 416/430 (96%), Gaps = 1/430 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagcccagggtcggctcaaggactacctagggcattggtgaaggccaggaagcaaagtt 60
           |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 taagcccaaggtcggctcaaggactacctagagcattggtgaaggccaggaagcaaagtt 260

                                                                       
Query: 61  cgattttgcttaggtatttggcaagtcattgctcagaggcacctacaataaaacaatact 120
           ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 cgattttgcttaggtttttgacaagtcattgctcagaggcacctacaacaaaacaatact 320

                                                                       
Query: 121 gaaaggaagcacacagatccatttgcaaggacaaaattggagcatacgtgctatggaatg 180
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaggaagcacacagatccattcccaaggacaaaattggagcatacgtgctatggaatg 380

                                                                       
Query: 181 ccacagttccaggagactaagtttccatgaaactctttgcctcaggactgcatccaggct 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ccacagttccaggagactaagtttccgtgaaactctttgcctcaggactgcatccaggct 440

                                                                       
Query: 241 tttggcctgtcatgcatgtcactactggagtggatgtagcaatgaagccaatgaagggaa 300
           |||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tttgtcctatcatgcatgtcactactggagtggatgtagcaataaagccaatgaagggaa 500

                                                                       
Query: 301 agtcagggaaactcagctattcacccactagtgttacagggttaagacatatgcaatgaa 360
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 501 agtcagggaaactcagctattcacccactagtattacagg-ttaagacatatgcaatgaa 559

                                                                       
Query: 361 tgttggcgtttaatgagaagtccttactgtaaattgcccttttctggtatctgtgaagat 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tattggcgtttaatgagaagtccttactgtaaattgcccttttctggtatctgtgaagat 619

                     
Query: 421 aacagaaaca 430
           ||||||||||
Sbjct: 620 aacagaaaca 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 829
Length adjustment: 9
Effective length of query: 421
Effective length of database: 820
Effective search space:   345220
Effective search space used:   345220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)