NCCCCCTCTCCTATTTGCGCGCGCTAATAGAATCACTACATCATCACAAG
GCGNGGAATTNNNTCTCTTACCTCTCACCTCCCCATGGNNGTCCCCANCC
CCTCCCTCTTCATACAGAGGAGATGTTGAGAAGTGTGTGCTTTGTAAATC
TTTAGAATGGTTTTGGTATGGGTTTTTAGGCTATCCTCCATCTTGTCTCC
TTCCCATAACCTCAGTGGTCACCGGTGTCCTGTGAAGAACATCTCTGCGC
TTCAGTGTGTTTACTTCCTCAGATTCTAGGCAAGGCTAATTGGTTCTCTT
GAAGATCAAACCCTTCCTTTGGGATTTTCTGTTTCTCCACTACCCACCGA
CCCACAGCCAGCCCCATTTTTTGGACCACTTATTTTGCGCGGAGGTGGCT
ACTTCTACGCGCCCCCTGCACATTCCCCCACTTTCCCGGCTGCGCTGCTC
CCTTCCTATGACCCGATTCCCCTACCCTCACCCCCACCCCCCCCCCCCTC
CCAACTGAACCCCCGCTCCTTCCTCTACCCCCCATGCCCCCCTGTCCCCC
CCCTTCCTCCCCTCCCCTCGTCCCCTTTCCCCCCCGCGTTTCCTCCTTTC
TTCACACTTCCCCCCCTCCCCCCCCCCCCCCCCCTCTCTTCTTCCCTACC
CTCTCCCCCCCCTCCATCCTATTCCCTTCCCCCCCCCCCCACTTACCTCT
CTCCCTCCTTTCTCTTCTTTCCTCTCCTCTTTCTTTCCCCCCCATATTTT
ATTTCTCCTCCCCCCCCCCCCTTCTTCTCTTTTCTTTCCTCCCCCCCTTT
CCG

NNAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATATTTCCTTCCTCATG
CCCCCCCTCCTTTTAGTGCAATCTACTCACCAATCTCTCCTTCCTTCCTC
TTCATACCTGAATCTCTCCTTCCTTCCTCTTCATACCTGATCACGGAAAC
CATCTCATAATGCACATGCACTCGTCATTCTACAGAGCTGCATCGTCCCT
TAGCACCACGTGGTACTGTGATTCCCGGATGACTTACTGAGAATTCGGTT
CTTATGCAACTGGGTTGTTCTAAGCTCTGTGCATCAAACCAAAGATGTTG
CAATGAATAGCCGTTGGAACTTTTATTTTCAAAATCTTGGCAGTATCCCA
TTGGGTTAGATCCTGAAAGTGGGCTAACGGTACTTACCTTGTCAGTTTGG
TTTTCATTAGAGATTGCAAAGGGCTGATGTTTTAAACTCAATTTATCCTT
ATTCATGAACTGGAGAAGGTTCCGTTGATCACATCTCTGAGTGCACCCAA
CGACAGGCCGCTTAATAAAGTCAGGGTGCTGGGTTGAGTTTTTCCCCCCT
CGTTGACAATTACCATAATGAACTGGTTTCTTCAATACCTCAAACACAGA
TGAACTAAGGAATCGTTTTTCTGTCTGTAGCTCGGTAATTATCCCTTATG
TTATTTAACCATCTTGAAGGAAATTTCCTCTCCTTATTGAACACAATCCC
GGCTCTTTCTTTATATGTGG

Query= MSMg01no390_g03.g1 MSMg01no390_g03.g1 CHROMAT_FILE:
MSMg01no390_g03.g1 PHD_FILE: MSMg01no390_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:17 2005
         (462 letters)



>mm_chr15_31109682_31110543
          Length = 862

 Score =  661 bits (342), Expect = 0.0
 Identities = 420/464 (90%), Gaps = 31/464 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatatttccttcctcatg-ccccccctcct-tttagtgcaatctactcaccaatctctc 58
           ||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||||
Sbjct: 714 ccatatttccttcctcatgcccccccctcttctttagtccaatctactcaccaatctctc 655

                                                                       
Query: 59  cttccttcctcttcatacctgaatctctccttccttcctcttcatacctgatcacggaaa 118
           |||||||||||||||||                      ||       ||||||| ||||
Sbjct: 654 cttccttcctcttcata----------------------ct-------tgatcacagaaa 624

                                                                       
Query: 119 ccatctcataatgcacatgcactcgtcattctacagagctgcatcgtcccttagcaccac 178
            |||||||||||||||||  ||| ||||||||||||||||||||||| ||||||||||| 
Sbjct: 623 tcatctcataatgcacatatacttgtcattctacagagctgcatcgtaccttagcaccat 564

                                                                       
Query: 179 gtggtactgtgattcccggatgacttactgagaattcggttcttatgcaactgggttgtt 238
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 563 gtggtactgtgattcccggatgacttactgagaatttggttcttatgcaactgggttgtt 504

                                                                       
Query: 239 ctaagctctgtgcatcaaaccaaagatgttgcaatgaatagccgttggaacttttatttt 298
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 503 ctaagctctgtgcatcaaaccaaagatgttgcaatgaatagctgttggaacttttatttt 444

                                                                       
Query: 299 caaaatcttggcagtatcccattgggttagatcctgaaagtgggctaacggtacttacct 358
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caaaatcttgtcagtatcccattgggttagatcctgaaagtgggctaacggtacttacct 384

                                                                       
Query: 359 tgtcagtttggttttcattagagattgcaaagggctgatgttttaaactcaatttatcct 418
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 tgtcagtttggttttcattagagattgcaaagggctgatgttttaaactcaatttatctt 324

                                                       
Query: 419 tattcatgaactggagaaggttccgttgatcacatctctgagtg 462
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tattcatgaactggagaaggttccgttgatcacatctctgagtg 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)