BAC Information

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BAC

Clone NameMSMg01-390J02
Chromosome15 (Build37)
Map Location 24,173,862 - 24,174,379
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624863, LOC666989
Downstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390J02.T7 (MSMg01no390_j02.b1)MSMg01-390J02.TJ (MSMg01no390_j02.g1)
ACCAG492548AG492549
length1,925735
length of high quality
(start - end)		---520 (83 - 602)
definitionCHROMAT_FILE: MSMg01no390_j02.b1 PHD_FILE: MSMg01no390_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:31 2005CHROMAT_FILE: MSMg01no390_j02.g1 PHD_FILE: MSMg01no390_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTGGTGTTAAGGTTGGTCNACTAGTGTAGTATGTGCTGGGGTTATGGACG
TACCTGTGAGTCTTATACACACAAACACNNTCTTCATCTCTTCTCTATCT
CNCTCTAGCGGCGCTTCTCTCCGNTGCCCACTCACCTTCTACCAACCATT
ANATATATGTGTAAATAATATAGACATCGCAGAGTTGGCGTGTCGTGTAG
TAGTATGGAGGAGNGGCAGGAGGGGATGCGACGAGAGGTGCGCGCGAGTA
GCGACTGAAGTGGCAGTGATCGACCGTCGCGTTATCTATGCGCGTGCGAC
GCCTCTATACNTCATACGCCTATACCAGCATTCGACCACCGCGAGTACTC
TACCATAGAGAATATAGATCGCAAGATAANTACTTATAATAGCTACACTA
TTGTTACAACTNACATTAGCATACANTACAGATCGCGCGCAGCGCCGCGC
GACGCACGTTACACACGCCNCGCGNCGGCGCACGGCTGCTCTAGCGTCTA
TGGTGTTCTNTGTGTCTCGCTCATATATTCTCTCTACGTAGCANTATCGT
CTGNGTATGCNTGATCTTCTTGGGTATGCTCTCGTCATCGTTGCACGACG
AGCAGGCGTCACAGGTCTTATAGCGCGTATCTCGAGAAGTCGCGCCACGT
ANGTGTTACGTCTCTCGTAACCNCTTGCTCCGTATATNGATGTATGCGTA
TATTCTATCGTNATACACTATCGCCGCATGTCATANTCGACACAACTATA
TACTNTAAATGACTCAGTAGTACTGTCACGTGTACTACGATCTCTTANCT
ACTCANCACAGGTGATATCTGTANCTCATANGAGACTATTGATAGCTACT
CGATATGACTTAGCAAAGCACAGATATGACTACGACAATATATGACAATG
AAAGTATATATCGCTGCGACATGTATAGTGTCCAGAATGTCTACTCATGC
ATGCGCACANACCATCATGAAGTACGTCATCTGAACTACGGACTCTATAA
CAGTGATGCGTCGAATAAGAGTCAAGGAAATGACGACAGCCGATGTACGT
ATGTACGTATGTATTTACGAGTATGTCAGACGTACTACTGACGGTGTGAC
TTGATCGCGCGCTTCTCCTCATTATGGCTCAGCGCTGCGTACAGCGACAT
TCAGTAGTACTACGCATGATGCACGCGTGAGTACGACGTGCATTNCNTCG
CGCTGCTNACGTGACGTATGACTGATCTATCTATACGCATCATCAGTGTA
GAAGTCAACGANACGCTCGCACACTGTATATCGNGACTCGTCNCACAGTG
CGCGTGTCTGATCACAGCACTCTACGACGCGCGCATGTATACTCACACAT
GCTCACTACTANCGACATTATATGCAGCNCACGCAGCAGACGATGTGTGT
ATGATAGATCAGCCAGCAATCCGCACAGTCGATACGNCTCATGTTCTCTG
CTGATATATACACCCTACTTACTCTAGACACTCGCTCACAAGCACGCCCN
ACTGTGCGCTATGATGAACGCTAGTCCCCGCACATCGTGNCCATGCTCGA
TGAGTGTAGCGACGACTACTCGCCGCATATCGGTACTGAGCGATGAGATG
CGATATCCATGGTGCGATCTCATGATTATAGATGAATTGCTGACCGACGT
AATATACTGTCGNTNTGATGCGTCCACTGGTAGCATAGCGCGCAACNGCG
ATATTGACCCNATCGCACTATTCGAGCGGTCTATCACNACACTATTCCAN
GATCATNGTTCGCTACAACACTACGCTATGATTACACCTNTATCTCACAC
CGTGATCCGAGCGCACGTCTCCTCATGTAACCGCGTGACGTCNAGCGACT
CGCGTGACGCGCGCGTCTGACTGATTGANTCTACCATTGCTCTAGTGTCC
GTCCCAGCGTCTATGTTACGAAGTN

CGGTGGCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCATGGCAAGTTTTCTA
AAGTCAATACTCTATGAAAGAGGAGGTCAGGGACTCCAAGGTTGGAAGAA
CCTCGTCGCAAGTTCAGTCAAGTCATGGAAACGTCAATGTCATGTAGGAC
ACCATACAAGAGAGGTAGAAACTTTGGGGAAAATAGTCTGTCTCTTCCTG
AACAAACTTCACGTCAAACTAAAATGAAAAGTGTGTGGTCCTACATTAGT
GATGAAATTTCCATGTCATATGCAGATGTGTAAAGAATAGAAATAAAATG
ACTCATAAAAGACTAAAATGACAGAGACCAGTGAGAGAAAATGGCTTAAA
AGGGCAATGTGTTAATGCACAAGTTATACATCTTAATTTTTAAAAATTTT
ATGATATTTTTAAACTCTGAATTCTATAATAATTTCCTTAGTATATCATT
TTGATTTCAAGTCAACTCATGACATAAAACATGGCAGCTGCTTCCTGTCA
ATTAATGTATGTATATATCTTTGTATGTATGTATGTATGTATGTATGTAT
GNATGNATGNNNNNNNNNTNNTNTTNNTNNNTTTTNTNTTTTTTTNNTTT
TTTTTNTTTTTNNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNNTTTNNT
TTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_j02.g1 MSMg01no390_j02.g1 CHROMAT_FILE:
MSMg01no390_j02.g1 PHD_FILE: MSMg01no390_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:31 2005
         (520 letters)



>mm_chr15_24173725_24174644
          Length = 920

 Score =  957 bits (495), Expect = 0.0
 Identities = 513/519 (98%), Gaps = 1/519 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accatggcaagttttctaaagtcaatactctatgaaagaggaggtcagggactccaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 accatggcaagttttctaaagtcaatactctatgaaagaggaggtcagggactccaaggt 596

                                                                       
Query: 61  tggaagaacctcgtcgcaagttcagtcaagtcatggaaacgtcaatgtcatgtaggacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tggaagaacctcgtcgcaagttcagtcaagtcatggaaacgtcaatgtcatgtaggacac 536

                                                                       
Query: 121 catacaagagaggtagaaactttggggaaaatagtctgtctcttcctgaacaaacttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 535 catacaagagaggtagaaactttggggaaaatagtctgtctcttcctgaacaaacttcat 476

                                                                       
Query: 181 gtcaaactaaaatgaaaagtgtgtggtcctacattagtgatgaaatttccatgtcatatg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtcaaactaaaatgaaaattgtgtggtcctacattagtgatgaaatttccatgtcatatg 416

                                                                       
Query: 241 cagatgtgtaaagaatagaaataaaatgactcataaaagactaaaatgacagagaccagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cagatgtgtaaagaatagaaataaaatgactcataaaagactaaaatgacagagaccagt 356

                                                                       
Query: 301 gagagaaaatggcttaaaagggcaatgtgttaatgcacaagttatacatcttaattttta 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| 
Sbjct: 355 gagagaaaatggcttaaaagggcaatgtgttaatgcacaagttacacatcttattttttt 296

                                                                       
Query: 361 aaaattttatgatatttttaaactctgaattctataataatttccttagtatatcatttt 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaaattttatgatatttt-aaactctgaattctataataatttccttagtatatcatttt 237

                                                                       
Query: 421 gatttcaagtcaactcatgacataaaacatggcagctgcttcctgtcaattaatgtatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gatttcaagtcaactcatgacataaaacatggcagctgcttcctgtcaattaatgtatgt 177

                                                  
Query: 481 atatatctttgtatgtatgtatgtatgtatgtatgtatg 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 176 atatatctttgtatgtatgtatgtatgtatgtatgtatg 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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