BAC Information

Click to search

BAC

Clone NameMSMg01-391A18
Chromosome15 (Build37)
Map Location 99,492,702 - 99,493,137
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1
Downstream geneLOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391A18.T7 (MSMg01no391_a18.b1)MSMg01-391A18.TJ (MSMg01no391_a18.g1)
ACCAG492914AG492915
length762777
length of high quality
(start - end)
251 (62 - 312)429 (74 - 502)
definitionCHROMAT_FILE: MSMg01no391_a18.b1 PHD_FILE: MSMg01no391_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:08 2005CHROMAT_FILE: MSMg01no391_a18.g1 PHD_FILE: MSMg01no391_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGACATCCGCGGAATTCCCA
AAATGTCCCCATTTTACTTTGAGAAATGTTTTAAAAAATATGTCTAGGAT
ACCAAAGACCAGCTTTGACATCCAGAGGAGGATAAACCAAGGCAGGTATG
GAGGAGCAGTGTCCTTGGGGGACAGTTCTGAGAGCAGCTGATGGGGGTCG
GTCCAGATGCTGATGGAGGCTCCTGCTTTTCAGAGGCAGTCAGAGATTAG
AGAAATTACTCAGCAGACTTTTCTGGGGGGGGGGCAAAGCTTGATTCACT
GAGGCTGGCACTCCTTGTAGCCAGAGAAGAACTCCCTCTGAACTCTGTTA
ATTCTTACAGGCTGGTGAGAAAGAAAAGGAAAGAGAAAATTCATACATAC
ACACACACACACACACACACACACACACACACACACACGCGCGTGCGCGG
ACATACACATACCCCCCCCCTCTCCCCACCGAGAATAGATGAAGCCAAAG
GCAGATTTCTATCCCTCACTTCATATTTGCAAATACTTGCTTGGCTGGCC
GCCCCCCTACCTTCCTATTTACATGCCCGCTGGGGGGCCAACCCACATTC
TCCTCCTCCATGGGAGGGGGGAGGTTCCCCCCCCCCCGCCCCCCCCCTTT
CCCCCCCTGCTTCACCCCCCCCCCCCCCCCTCTGCCACTTTTTCTCTTTG
GGATGGTGCCAGATTCCCCCCCCCGGGCCCCCGTCTTTCTCCTTCCCCTC
CCCCCCCTTATT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCTGGGATTCATTATGCAACCCTTCC
CTACCTCATCAGGAACTGTTCTCTTTCCAGTCAGGCCAATCACAGGCTTT
CATATTTTAGTGTATGGCCCTAATCTTCCTCCGCCCACCACCCCCATGCT
TCTGGTCCTGAGGCCTTATCTTTACAGCGCAGCCCACCGGATAGCGCTGT
TCCGAACGGGGCCTGGTCTGGTTAAGCTGAAAGCCCTTGGTCAATTGGTT
AACTGGGACTTCAGCCTTTCCTTCTCATCAGCTGCTAAGACCTCCAGCAT
TGTCAGCCAGGGCACCGAAGCAAGTTTTTAAGATGAGGTATTAAGGGCTT
AAATTAGGGCAGTGGCAGTGGAAATAAAAAAGGAGAGGACAGGTTTTTTT
TTTTTTTCCAGACAGTTTTTAGGAAGCCCACGAAGGCGAAATTGACTTCT
GGTAACTGGAGGATAATATTTGCCTCATGGAACCAATGAAGTACCCGTGA
GGCCTCTTGTGCCCTTAAAGCACCATTAAACCCTTTTCTTCCCCCCTCTC
TCTCCATTTTGTTATCAAGCTACGACTACTAAAGGGGTGGAAAAAACATC
ACCCCGGGCTTTTTTTATAAGGTTTCCTATAAACCGCCCCTCGATATTCT
TCCCCTCCCACGTTTTTTACCTCCCTCTACATTATATTTCCTATTCTTTC
CTTAACCAAAACCCCCTGTTCATCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_a18.g1 MSMg01no391_a18.g1 CHROMAT_FILE:
MSMg01no391_a18.g1 PHD_FILE: MSMg01no391_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:08 2005
         (429 letters)



>mm_chr15_99492553_99493382
          Length = 830

 Score =  777 bits (402), Expect = 0.0
 Identities = 425/436 (97%), Gaps = 7/436 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgggattcattatgcaacccttccctacctcatcaggaactgttctctttccagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttctgggattcattatgcaacccttccctacctcatcaggaactgttctctttccagtca 526

                                                                       
Query: 61  ggccaatcacaggctttcatattttagtgtatggccctaatcttcctccgcccaccaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggccaatcacaggctttcatattttagtgtatggccctaatcttcctccgcccaccaccc 466

                                                                       
Query: 121 cc-atgcttctggtcctgaggccttatctttacagcgcagcccaccggatagcgctgttc 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ccaatgcttctggtcctgaggccttatctttacagcgcagcccaccggatagcgctgttc 406

                                                                       
Query: 180 cgaacggggcctggtctggttaagctgaaagcccttggtcaattggttaactgggacttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cgaacggggcctggtctggttaagctgaaagcccttggtcaattggttaactgggacttc 346

                                                                       
Query: 240 agcctttccttctcatcagctgctaagacctccagcattgtcagccagggcaccgaagca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agcctttccttctcatcagctgctaagacctccagcattgtcagccagggcaccgaagca 286

                                                                       
Query: 300 agtttttaagatgaggtattaagggcttaaattagggcagtggcagtggaaataaaaaag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agtttttaagatgaggtattaagggcttaaattagggcagtggcagtggaaataaaaaag 226

                                                                       
Query: 360 gagaggacagg------ttttttttttttttccagacagtttttaggaagcccacgaagg 413
           |||||||||||      |||||||||||||| |||||||||||||||||| ||| |||||
Sbjct: 225 gagaggacaggtttttttttttttttttttttcagacagtttttaggaagtccatgaagg 166

                           
Query: 414 cgaaattgacttctgg 429
           | ||||||||||||||
Sbjct: 165 caaaattgacttctgg 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 830
Length adjustment: 9
Effective length of query: 420
Effective length of database: 821
Effective search space:   344820
Effective search space used:   344820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)