Query= MSMg01no391_p12.b1 MSMg01no391_p12.b1 CHROMAT_FILE:
MSMg01no391_p12.b1 PHD_FILE: MSMg01no391_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:21 2005
(194 letters)
>mm_chr15_18761729_18762318
Length = 590
Score = 325 bits (168), Expect = 1e-93
Identities = 186/194 (95%), Gaps = 4/194 (2%)
Strand = Plus / Plus
Query: 1 gaggagaaaatgggggaatattagtggagatattataaaaccttgagaaaacaaatataa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggggaaaatgggggaatattagtggagatattataaaaccttgagaaaacaaatataa 260
Query: 61 ttgaactgttaggaaggaagactgaaagaattcttgtcaaaattccttcaaaatttgtaa 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaactgttaggaag----actgaaagaattcttgtcaaaattccttcaaaatttgtaa 316
Query: 121 aggtgtgtaagtatttgatatgttgttgtgagtgtattcagtttagaaacgcacaaatta 180
||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 317 aggtgtgcaagtatttgataagttgttgtgagtgtattcagtttagagacgcacaaatta 376
Query: 181 cacgtgaaaatgat 194
||||||||||||||
Sbjct: 377 cacgtgaaaatgat 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 590
Length adjustment: 8
Effective length of query: 186
Effective length of database: 582
Effective search space: 108252
Effective search space used: 108252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no391_p12.g1 MSMg01no391_p12.g1 CHROMAT_FILE:
MSMg01no391_p12.g1 PHD_FILE: MSMg01no391_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:21 2005
(279 letters)
>mm_chr15_18905852_18906530
Length = 679
Score = 509 bits (263), Expect = e-148
Identities = 275/279 (98%)
Strand = Plus / Minus
Query: 1 ctttaaatacaggaaagggtgatgcatcaacactctactatttatttctgagttgcttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ctttaaatacaggaaagggtgatgcatcaacactctactatttatttctgagttgcttat 420
Query: 61 gctgctcacagtatctctgtttgtcctacaaactgatactgctttaatggagagccagtc 120
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 419 gctgctcacagtatctctgtttgtcctacaaaccgatactgctttaattgagagccagtc 360
Query: 121 tgttctccttcctgggttagtctctatgcgagtcgagaggcagagaactggagtgaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgttctccttcctgggttagtctctatgcgagtcgagaggcagagaactggagtgaagaa 300
Query: 181 gcaaagactcttatgtacacactgacaaaggcaaaggaacacagccctggtgtccatctc 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 299 gcaaagactcttatgtacacactgacaaaggcaaaggaacacagccctgttgtccatctc 240
Query: 241 gtttcatttgcatgctacttattttttatcttacacttg 279
||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctttcatttgcatgctacttattttttatcttacacttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
