BAC Information

Click to search

BAC

Clone NameMSMg01-392D24
Chromosome15 (Build37)
Map Location 54,126,950 - 54,127,360
singlet/doubletsinglet
Overlap genenone
Upstream geneExt1, Samd12, EG665097, EG621631, Tnfrsf11b
Downstream geneLOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392D24.T7 (MSMg01no392_d24.b1)MSMg01-392D24.TJ (MSMg01no392_d24.g1)
ACCAG493828AG493829
length795758
length of high quality
(start - end)
459 (48 - 506)379 (75 - 453)
definitionCHROMAT_FILE: MSMg01no392_d24.b1 PHD_FILE: MSMg01no392_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:43 2005CHROMAT_FILE: MSMg01no392_d24.g1 PHD_FILE: MSMg01no392_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCG
CGGAATTCTCTGCTTTTCCTCTGATGGGAACAAACTCCCTGCAGTACCTG
TCATTTGTCATAGGTTGTGATCCACCCACCCCATTCCCATCCACTCCTAA
ACCATGAGTAATCTTTCTTCTGTCTGGGACACATCTCCTCTTTTATATTC
CTCTCAAAACTCTACGAGTTTTTCCAAATAACTGTTTCTCATGAAGCCTT
TATATATACCATTCCCACTGAATTGCAAGTACTCCCATCTTATCTTCCAA
ACTAAATTCTTTATATAATAGTTCTATGTTTATGCTGTCTGACCACTACA
TTTATGGATCTTTTTGGAAACTATGTAACAGTATAGGATGCTGAGGATGA
GAAAACTCAGTGGAAGAGATCAGGTAAGAGGTAATGAGCATACATAGACA
TCCAAGGTAGTAGGTTGAACTGTGACAAGTGAGGGTTTCTATGTTGTAAG
TACTCGGGGACACTTTGATCCTAAGTAACTTGACTTCCAGGGTCCTGGGA
GAGTTTGGGTGTTATGAAACAAGGTTTTTTTTTCCCTTTCATTTTTCCCG
GGAAGNAAGGGCCCATTGAAGAATGGCCTTCCCTTCCAATAATAAAAATT
CCCTTGGCAGCTGGGTTGACTAACTCCAAGAAAAACCCTAGAACTCGGCC
AAAAATTTTTTTGGAAAAAAGAAAAATTGCTTGGGGGGAAATAAGGGTTT
CCAACACCCCCTTAAAGGGTGTCCCGCCCGCCCGGGGGCGGCGGG
NCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATCTATAACCCATTTTT
AATTGAATTATTTAGGATGTTTCAATGTCTAGTTTCTTGAGTTCTTTTTA
TATTTTGGATGTTAGTCCTTTATCAGCTACAGAGTTGGCAAAAATCTTTT
CCTGTTCCATAGGCTGCCACTTTGTCTGATTGTGTCTTTTGCCTTATAGA
AGTTTTTTCAGTTTCATGCATTCCCATCTATTAAGGTTTGATATTAGTAC
CGGTGCTAATGGTGTTCTCTTGTTTTGGTCTTCTATGCCAATGAGTTCAA
GACTATTGCCTACTTCCTCTTCTATCAGCTTCATTGTATCTGGTTTTAGG
TCAAAGTCTTTGATCCGCTTGGAGTTGAGCTTTATGCGGGATGGTAAGTG
TGGATCTATTTGTGCTTTTCTACCTGTACAGGTCTAGCTTGACCAGCCTG
ATCAGATAAACTTTATACATTGAATCTTATTTTCATCTTACACCTTCCTT
ATTCCAGATTATTCGTCCCCATGTTCTATTCCACTACTACTTCCGTTAGT
TCCGGTGCTCTTCCGTTTCCCCGCTCTTTTTTTATCCCTCTTACTAATAG
TTCTCGCCCTTTCTTTCTTCCACCTGGCCGGTACCTTTCTTTTTTTCTCT
GTGTTTTGCCTTTTTGCGCCCGTCTACCCCGTTTTCTCCCTCCCTTTTCC
TCCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_d24.b1 MSMg01no392_d24.b1 CHROMAT_FILE:
MSMg01no392_d24.b1 PHD_FILE: MSMg01no392_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:43 2005
         (459 letters)



>mm_chr15_54126703_54127560
          Length = 858

 Score =  758 bits (392), Expect = 0.0
 Identities = 407/412 (98%), Gaps = 1/412 (0%)
 Strand = Plus / Minus

                                                                       
Query: 48  tacctgtcatttgtcataggttgtgatccacccaccccattcccatccactcctaaacca 107
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 658 tacctgtcatttgtcataggttgtgatccaccaaccccattcccatccactcctaaacca 599

                                                                       
Query: 108 tgagtaatctttcttctgtctgggacacatctcctcttttatattcctctcaaaactcta 167
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 598 tgagtaatctttcttctgtctgggacacatc-cctcttttatattcctctcaaaactcta 540

                                                                       
Query: 168 cgagtttttccaaataactgtttctcatgaagcctttatatataccattcccactgaatt 227
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 539 cgagtttttccaaataactgtttctcatgaagcctttatatataccatttccactgaatt 480

                                                                       
Query: 228 gcaagtactcccatcttatcttccaaactaaattctttatataatagttctatgtttatg 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gcaagtactcccatcttatcttccaaactaaattctttatataatagttctatgtttatg 420

                                                                       
Query: 288 ctgtctgaccactacatttatggatctttttggaaactatgtaacagtataggatgctga 347
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 419 ctgtctgaccactacatttatggatctttttgaaaactatgtaacagtataggatgttga 360

                                                                       
Query: 348 ggatgagaaaactcagtggaagagatcaggtaagaggtaatgagcatacatagacatcca 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggatgagaaaactcagtggaagagatcaggtaagaggtaatgagcatacatagacatcca 300

                                                               
Query: 408 aggtagtaggttgaactgtgacaagtgagggtttctatgttgtaagtactcg 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aggtagtaggttgaactgtgacaagtgagggtttctatgttgtaagtactcg 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 858
Length adjustment: 10
Effective length of query: 449
Effective length of database: 848
Effective search space:   380752
Effective search space used:   380752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)