BAC Information

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BAC

Clone NameMSMg01-392F04
Chromosome15 (Build37)
Map Location 61,770,854 - 61,771,336
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3, LOC100040430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392F04.T7 (MSMg01no392_f04.b1)MSMg01-392F04.TJ (MSMg01no392_f04.g1)
ACCAG493884AG493885
length765778
length of high quality
(start - end)
487 (50 - 536)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no392_f04.b1 PHD_FILE: MSMg01no392_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:48 2005CHROMAT_FILE: MSMg01no392_f04.g1 PHD_FILE: MSMg01no392_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGACATTGTTTTAAATTTAAAATCCAATTTTCAAAAGGAGC
TATTTCAAACTACTTAGTGGGGAACATTCCCCACCTTTTCACCTTTTCTG
AAGTCCCCCCATCAGTCAGTTGTCAGAGGCTTCGACTGCCTAGCCTATTT
GTGCTGATCCCAGACCTTCGTCCCCTGCTATCTGGTTAGGCTGCGTGCCA
TGGGGTTGGTGCAGTGATTAACTAACCCAATGGCAGTGCGTACCCACTGG
GCAGCCACACTGAGAGGAGGAGGCCTATTTGAGGACATATAAGGAATGAC
ACAGGAACTGAGCCAAGCCACCTGCAGCTCAAGGTTGTCACAGAAAAGGT
GTCAGAGCAGAGCTGCACAGGGTGAGAAACCTGATAGTGCAGACATCGAG
TCCTGTGTGTCCCTCTGAAGTCACAAAGCTAAGGTGCTTGGGCTCATTTG
CCAAGTTTTAAGAACCTGACGTCTGTGGAAGTGGCCATCCCTTGGAGAGA
GAAGCCAGTGAGCTCATGGAGCCATTTCTATCTATCAGGCCTGGCCCGCA
GCATACATTTTCCCTTGCGATGCCTTGCGATTTCCCTCTTGGCACCCCAT
GAAACAACCGTGCCCATTCCAGCCCCGCTCTCCTGACCTTCCTTTCCGGC
ACACCCCCTCCCGCCGCCCAACCCCCGCCCCCCGTTCCGGTGCATAGGCC
GTCTCAACAATCCCG
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CTGTCTGGCGGTTCCTCAGAGAATTTTACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACTGAGGATTGTATACAGACCATG
CGTTATATCTTACCCCATGGAGCATCATCCTGCTTTTATCCCGAATGATC
CTTCCAATTCCTCCCCCATGGTATTTAATCGGCGGCGTCTTCTTCTGTGC
GTTGTTATTTTTTTACCCCTGTACTTCCCTCTTTTTTCCTTTTTTCTTTA
TGGAATAACACCCCTAAACCTTATAAATCCCTCCCTATATAAATCCCTCC
CCCCCCTCTCTTTAATTTTTTCTCCATTTTTCAATTGTCCCCCTCTTCCC
CCGCTTCCCCCTCTTTTTTGTTCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_f04.b1 MSMg01no392_f04.b1 CHROMAT_FILE:
MSMg01no392_f04.b1 PHD_FILE: MSMg01no392_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:48 2005
         (487 letters)



>mm_chr15_61770650_61771536
          Length = 887

 Score =  919 bits (475), Expect = 0.0
 Identities = 481/483 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagacattgttttaaatttaaaatccaattttcaaaaggagctatttcaaactac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattcagacattgttttaaatttaaaatccaattttcaaaaggagctatttcaaactac 628

                                                                       
Query: 65  ttagtggggaacattccccaccttttcaccttttctgaagtccccccatcagtcagttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttagtggggaacattccccaccttttcaccttttctgaagtccccccatcagtcagttgt 568

                                                                       
Query: 125 cagaggcttcgactgcctagcctatttgtgctgatcccagaccttcgtcccctgctatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagaggcttcgactgcctagcctatttgtgctgatcccagaccttcgtcccctgctatct 508

                                                                       
Query: 185 ggttaggctgcgtgccatggggttggtgcagtgattaactaacccaatggcagtgcgtac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggttaggctgcgtgccatggggttggtgcagtgattaactaacccaatggcagtgcgtac 448

                                                                       
Query: 245 ccactgggcagccacactgagaggaggaggcctatttgaggacatataaggaatgacaca 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 447 ccactgggcagccacactgagaggaggaggccaatttgaggacatataaggaatgacaca 388

                                                                       
Query: 305 ggaactgagccaagccacctgcagctcaaggttgtcacagaaaaggtgtcagagcagagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggaactgagccaagccacctgcagctcaaggttgtcacagaaaaggtgtcagagcagagc 328

                                                                       
Query: 365 tgcacagggtgagaaacctgatagtgcagacatcgagtcctgtgtgtccctctgaagtca 424
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgcagagggtgagaaacctgatagtgcagacatcgagtcctgtgtgtccctctgaagtca 268

                                                                       
Query: 425 caaagctaaggtgcttgggctcatttgccaagttttaagaacctgacgtctgtggaagtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caaagctaaggtgcttgggctcatttgccaagttttaagaacctgacgtctgtggaagtg 208

              
Query: 485 gcc 487
           |||
Sbjct: 207 gcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)