Query= MSMg01no392_l05.b1 MSMg01no392_l05.b1 CHROMAT_FILE:
MSMg01no392_l05.b1 PHD_FILE: MSMg01no392_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:19 2005
(539 letters)
>mm_chr15_6637257_6638195
Length = 939
Score = 988 bits (511), Expect = 0.0
Identities = 529/535 (98%)
Strand = Plus / Plus
Query: 5 gaattctagaaccttctccagaacagataagcatcatttactatccccaaattctttgta 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattctagaaccttctccagaacagataagcatcacttactatccccaaattctttgta 264
Query: 65 cagacaatatgacttagcagcatttatgaccctctgaaagtttggtacatactaggtaca 124
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 cagacaatatgacttagcagcatttatgaccctctggaagtttggtacatactaggtaca 324
Query: 125 aatagaaacagcctttaataaaaatcttggaaaaataaataaataaaaagaaatgtaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatagaaacagcctttaataaaaatcttggaaaaataaataaataaaaagaaatgtaaat 384
Query: 185 gaggaaaatacctaataaaaatattttaaaaaaaaatcttggacacttttgtctctaaca 244
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 gaggaaaatacctaataaaaatattttttaaaaaaatcttggacacttttgtctctaaca 444
Query: 245 ggctccccttgtgacctcctttgcacatttgtctttacaaatcactgctgggggcatgac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggctccccttgtgacctcctttgcacatttgtctttacaaatcactgctgggggcatgac 504
Query: 305 acataactctaactccaaatgtacttcatggttcagattccatccagaaggaagaagggc 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 acataactctaactccaaatgtacttcatggttcagattccattcagaaggaagaagggc 564
Query: 365 gaaagaaaagaagggcaaaagaaaagaaaacttccaggaaatgtccctcattttagggac 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaagaaaagaagggcgaaagaaaagaaaacttccaggaaatgtccctcattttagggac 624
Query: 425 atttcctggaagtttcaagcacaatgtttaactatccttcccagtgatcaagtcagttga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttcctggaagtttcaagcacaatgtttaactatccttcccagtgatcaagtcagttga 684
Query: 485 ccacacccatgtgcaggaaaggcttgtaaatacattgttattcctaatgtaaact 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccacacccatgtgcaggaaaggcttgtaaatacattgttattcctaatgtaaact 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_l05.g1 MSMg01no392_l05.g1 CHROMAT_FILE:
MSMg01no392_l05.g1 PHD_FILE: MSMg01no392_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:19 2005
(425 letters)
>mm_chr15_6825163_6825987
Length = 825
Score = 775 bits (401), Expect = 0.0
Identities = 415/425 (97%), Gaps = 9/425 (2%)
Strand = Plus / Minus
Query: 1 ctctgcatacatgcatggaaaccaaaggccgtattaacccgatgcaggaaacaccttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctctgcatacatgcatggaaaccaaaggccgtattaacccgatgcaggaaacaccttgct 471
Query: 61 caactgacacacccgcacaccattttcacagataaatagaatcaaaaagcctttttaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 caactgacacacccgcacaccattttcacagataaatagaatcaaaaagcctttttaatg 411
Query: 121 ggtgagaacttggctccacactgctcccgcggctgttcgcacggccacactaatgggctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggtgagaacttggctccacactgctcccgcggctgttcgcacggccacactaatgggctc 351
Query: 181 atttaaaataagtaataatggctgtggcaaaggagcacacattatttactagacacgatg 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 350 atttaaaataagtaataatggctatggcaaaggagcacacattatttactagacacgatg 291
Query: 241 tgcctttttctaattctcttcaaatatttgctgtgtgctccagtctttcaggcaccatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgcctttttctaattctcttcaaatatttgctgtgtgctccagtctttcaggcaccatta 231
Query: 301 ggtattaggtatttagaggagtactatctttaataataataataataataataataataa 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 230 ggtattaggtatttagaggagtactatctt---------taataataataataataataa 180
Query: 361 taataataataataataataaaagatccttccctgaattgtcattagggaggaagaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 taataataataataataataaaagatccttccctgaattgtcattagggaggaagaaaaa 120
Query: 421 gcata 425
|||||
Sbjct: 119 gcata 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
