BAC Information

Click to search

BAC

Clone NameMSMg01-393E05
Chromosome15 (Build37)
Map Location 14,150,411 - 14,150,885
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039907, LOC666686, LOC239338, LOC666708
Downstream geneLOC674819, LOC100040024, LOC100040033
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393E05.T7 (MSMg01no393_e05.b1)MSMg01-393E05.TJ (MSMg01no393_e05.g1)
ACCAG494602AG494603
length1,176759
length of high quality
(start - end)		---476 (64 - 539)
definitionCHROMAT_FILE: MSMg01no393_e05.b1 PHD_FILE: MSMg01no393_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:08 2005CHROMAT_FILE: MSMg01no393_e05.g1 PHD_FILE: MSMg01no393_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACACAATAAAGACAAATNTNNATTTTTTTTTATAATATATATACTTGTTA
TATTCTTTTNTATTTTTTTATTCAGATCTATTATAATATATTCTCCCTAT
TAATAATTATAAATAATATATATTATACTATAATTATCATTCATTATTTC
TCTATAACTTATATTANATATAATCCTCTATTTAAGCATCATCTACGTTT
TCCAAGTACAGAACAAACTTAGNTACAATATTATATTNTTAACGAATACG
TTTAGTTNTTTACTAAGTTCTTAAAAATAAAAGACATTAATCAATATTTC
TATTTCATTATTTTTATCACAGTTACTTATCTACTATTATCTCACCCACT
ACTTGAGATTTTCTCTATTATATTTCTTTCACTATAATTTAACTTTTCTA
ATAATTATATCATCATTCTATTATATATATAAATAACTATATAATATATA
TTATTTATATATTATAATATTCTAATATAATANAGAACAACTAATTAAAT
TAAAAATAATTAATATATAATAATATATTACATATATATAAATAATAATA
TATCATAAAATAAATATTACATAATATATCAATAATATTATATAATATTA
ATAATATCATCAATCTCTATTCACACAAATAATATAATCTTATAACAATT
ACATATATCTATTCTATTCTTATTACCTATATAATTATATACAATTATTA
TATATACTTATTNTTACTCTCATATACTCTAATAATATAATCTATATAAA
CTAAATGATACATTCCTACAATTAAAATTTACATAAATACACAACTAAAT
ATTATATAAACTAAAAACCCTACACCTCCATATCAAACACCATTATATTA
TTATAATTATTATATATTACCATTTATAATTACCCCTTTATAATATTATA
TCATATATAATATATCATATATAATCATTTAATTNAATTAAAACACACAT
ACACATTATAAACATAAATATACAATAACTACATTACTATACTTATCTCC
ATAATCTATCCATAATATNTATTACAATTATTATCCAATATCTATTATAT
CTTATTAATTATTATATAAACTCATCTATTCTTATATTATATTACCTCCA
ACAACAACTAATACTCACAACTCTATATATTAAATATTCATATTATATAT
ACCTAACTACTATATATATTAATATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTGCAGGTGTTTCCCATTTGCTTTCTTTACAGGCTT
GCACATAACCATCCCACTGCTCACACCTGAGGTTTGTAAGTCTGGTTAGA
ACACATAGCTACAGTTCCACTGTCATCTGGCCCCTACCCCAGCAAACTGT
TGACAGGTCATCAACTAGTTATTAGAGAATTATGGGAAATTAACTCAGAA
AAAAAGATTAAGATTATGGATATTTTTATTTCCAGATGCTCTATTTTTGT
ACTATACATATAATTTTAGTATTTTTTTTCTCCCATGGCAGGTTGTGACA
TGGGTCAATCAATACTAAATTCATCCCAACTTCCTGGCTTGCCAGCAATT
TTAGAGCAATTGCTCTGTACTCTATTGATCCATTGATAATGGCAGATTGT
TTGACTGACAGTTTTAAGGCTTTGTAAAAATTACAAAATGGGCCCAGTCA
AAGATTTCAATGAAACATATCTTACTACAGAGAATATGGCTAACGTTCAA
TAGGATACTGAAAAAGAANAGAGCAATATCTAATACATTTATTATCATTA
ATTAAATCCACCAACCAATATATTATACTGGTGTAACAGACAGACAGTCT
TGTTTTAGTACTGGAGGGGTAAAAACCGCAAACTTATTTTGGAAGCTAAT
GTGTAGCTAAGGGGCTCCGAATTAAAATCATCTTAACCCCCGGGCTATCC
TTCTAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_e05.g1 MSMg01no393_e05.g1 CHROMAT_FILE:
MSMg01no393_e05.g1 PHD_FILE: MSMg01no393_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:08 2005
         (476 letters)



>mm_chr15_14150211_14151087
          Length = 877

 Score =  872 bits (451), Expect = 0.0
 Identities = 469/475 (98%), Gaps = 1/475 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcaggtgtttcccatttgctttctttacaggcttgcacataaccatcccactgctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcaggtgtttcccatttgctttctttacaggcttgcacataaccatcccactgctca 260

                                                                       
Query: 61  cacctgaggtttgtaagtctggttagaacacatagctacagttccactgtcatctggccc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacctgatgtttgtaagtctggttagaacacatagctacagttccactgtcatctggccc 320

                                                                       
Query: 121 ctaccccagcaaactgttgacaggtcatcaactagttattagagaattatgggaaattaa 180
           ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 321 ctatcccagcaaactgttgacaggacatcaactagttattagagaattatgggacattaa 380

                                                                       
Query: 181 ctcagaaaaaaagattaagattatggatatttttatttccagatgctctatttttgtact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagaaaaaaagattaagattatggatatttttatttccagatgctctatttttgtact 440

                                                                       
Query: 241 atacatataattttagtatttttttt-ctcccatggcaggttgtgacatgggtcaatcaa 299
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 atacatataattttagtatttttttttctcccatggcaggttgtgacatgggtcaatcaa 500

                                                                       
Query: 300 tactaaattcatcccaacttcctggcttgccagcaattttagagcaattgctctgtactc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 tactaaattcatcccaacttcctggcttgccagcaattttagagcaattgctctgcactc 560

                                                                       
Query: 360 tattgatccattgataatggcagattgtttgactgacagttttaaggctttgtaaaaatt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattgatccattgataatggcagattgtttgactgacagttttaaggctttgtaaaaatt 620

                                                                  
Query: 420 acaaaatgggcccagtcaaagatttcaatgaaacatatcttactacagagaatat 474
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaaatgggcccagtcaaagatttcaatgaaacatatcttactacagagaatat 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 877
Length adjustment: 10
Effective length of query: 466
Effective length of database: 867
Effective search space:   404022
Effective search space used:   404022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |