BAC Information

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BAC

Clone NameMSMg01-393F15
Chromosome15 (Build37)
Map Location 5,297,610 - 5,490,776
singlet/doubletdoublet
Overlap geneLOC666291
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308
Downstream geneLOC666319, LOC100039358, LOC666323, Dab2, C9, LOC100039396, LOC100039412
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393F15.T7 (MSMg01no393_f15.b1)MSMg01-393F15.TJ (MSMg01no393_f15.g1)
ACCAG494670AG494671
length777775
length of high quality
(start - end)
569 (34 - 602)538 (64 - 601)
definitionCHROMAT_FILE: MSMg01no393_f15.b1 PHD_FILE: MSMg01no393_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:15 2005CHROMAT_FILE: MSMg01no393_f15.g1 PHD_FILE: MSMg01no393_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,490,333 - 5,490,776)(5,297,610 - 5,298,147)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTATTA
ATTATAAATATCTTGGTATCTTCAGAATAAGTAATTATACCTACTGTAAT
AAAAGGAAACTAAACAAAACAATTTTTTTAATCTGATCAAAAATGGTCTG
CATTTAAAGGTTGCTGCCCCAATATTTAACCATCTAACCTTAATTACTGT
AGTGTTCCATATGGTAATGGAGTATACTGACCACCACAAGTTGTCCTCTG
AAATATGGAACTCTCTCTCTCTCTCTCTCACACACACACACACACACACA
CACACACACATACACACACATATACATATACATATACATATACATATACA
TATACATATACATATACATATACATATACATATACATATGTATACATATG
CCCCAGTAGTACAGGGGAATGCCAGGGCCAAGAAGCGAGGAGGGGGGCGG
GTAATAGGGGACTTTCAGGATAGCATTTGAAATGTAAATGAAGAAAATAC
CTAATTAAAAAATGAAAAAAATTTTTCAATAAAGGAAATATTTCAAGTAA
GTGAATCTGTTCACTAAATCCCAGAGAGCTAGAAAGATATATTTATATAC
AGAGAANAAAAATGAGCTAAATTTCAAGATATTTACATAAGTTATCCTGA
CTATTTTATTCCATGATGAAAAGATGTGACACTTTTATACGAAAGAACAT
TGTGATGCCTTATTTCTTGACCCTATTCCTGAAGAAATGTTAAAACAAAT
TGGACTCCTTTCCAAATAAAAATAATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGCCAGGACTGATTATATAAAAGGGGCTTTTTATAT
TTTGGTCAAAGGAACAAGACCCCACTCAACAAACACATTTTCTTGGCTAT
TTCACTCAACAAACACATTTTCATGGCTATTTATCATTTTTTTTTATCTT
GTTCCTGTTGAACTTCCTGGCCACAGTGACTGTATGCTTGACTCTTGAAC
TAGATAACATGATCTCAGAAATATGCTCTTTGGGAACTGCAGAGAGTCCA
GACTTGAAGGATCAGCACAGTCCCTTGCGAACATGTTCCAAGCATCCAGC
TGTTACCACTGCAATGAGCTGGTGCTTCCGCACTGGGAAGTACAGGGTTC
CAGTGCCAGAAGCGTTGGTAAAATGCTTGTTCCCGAACTTTAGAGCAGAT
AAAGAAAAAACAGTTTTGGGGAAGTGATGGTGAGCATGGGGAACATACTT
TCACAGTGATGAGGCCACAGCGAATTTCTAGGAGACAAGCTGTCACTTAG
GTATGATCAGAGCTCTTTTCCCAAATACGTTCTCTCATGGCAACTACTTG
GTGCAGTGTGTGGTCTGAGATGGTAACTTCCTTTCATCCCTAGTGNTCTA
ACAGCCCCTGTCTGAATGTATCCAGCAATGAAGTACATTACTAAAATAAG
AACAAAGGTTGTCCAGCTCAAGAGGTTGACTCCTTGGCTTATCGTGGCCT
TTTTCTTAAACATGGTTCCAATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_f15.b1 MSMg01no393_f15.b1 CHROMAT_FILE:
MSMg01no393_f15.b1 PHD_FILE: MSMg01no393_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:15 2005
         (569 letters)



>mm_chr15_5490333_5491300
          Length = 968

 Score =  667 bits (345), Expect = 0.0
 Identities = 420/451 (93%), Gaps = 15/451 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattattaattataaatatcttggtatcttcagaataagtaattatacctactgt 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 gaattcattattaattataaatatcttgatatcttcagaataagtaattatacctactgt 385

                                                                       
Query: 65  aataaaaggaaactaaacaaaacaatttttttaatctgatcaaaaatggtctgcatttaa 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataaaaggaaactaaacaaaac-atttttttaatctgatcaaaaatggtctgcatttaa 326

                                                                       
Query: 125 aggttgctgccccaatatttaaccatctaaccttaattactgtagtgttccatatggtaa 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 325 aggttgctgccccaatatttaaccatctaaccttaattcctgtagtgttccatatagtaa 266

                                                                       
Query: 185 tggagtatactgaccaccacaagttgtcctctgaaatatggaa----ctctctctctctc 240
           |||||||||||||||||||||||||||||||| ||||||||||    |||||||||||||
Sbjct: 265 tggagtatactgaccaccacaagttgtcctctaaaatatggaactctctctctctctctc 206

                                                                       
Query: 241 tctctcacacacacacacacacacacacacacacacatacacacacatatacatatacat 300
           |||||| | |||||||||||||||||||||||||||  ||||||||||||  ||||| ||
Sbjct: 205 tctctctctcacacacacacacacacacacacacac--acacacacatat--atatatat 150

                                                                       
Query: 301 atacatatacatatacatatacatatacatatacatat----acatatacatatacatat 356
           ||| ||||||||||  ||||| ||||| ||||| ||||    ||| | ||||||| ||||
Sbjct: 149 atatatatacatat--atatatatatatatatatatatacacacacacacatatatatat 92

                                                                       
Query: 357 gtatacatatgccccagtagtacaggggaatgccagggccaagaagcgaggaggggggcg 416
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  atacacatatgccccagtagtacaggggaatgccagggccaagaagcgaggaggggggcg 32

                                          
Query: 417 ggtaataggggactttcaggatagcatttga 447
           |||||||||||||||||||||||||||||||
Sbjct: 31  ggtaataggggactttcaggatagcatttga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space:   535522
Effective search space used:   535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no393_f15.g1 MSMg01no393_f15.g1 CHROMAT_FILE:
MSMg01no393_f15.g1 PHD_FILE: MSMg01no393_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:15 2005
         (538 letters)



>mm_chr15_5297410_5298347
          Length = 938

 Score = 1033 bits (534), Expect = 0.0
 Identities = 537/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgccaggactgattatataaaaggggctttttatattttggtcaaaggaacaagacccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgccaggactgattatataaaaggggctttttatattttggtcaaaggaacaagacccc 260

                                                                       
Query: 61  actcaacaaacacattttcttggctatttcactcaacaaacacattttcatggctattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcaacaaacacattttcttggctatttcactcaacaaacacattttcatggctattta 320

                                                                       
Query: 121 tcatttttttttatcttgttcctgttgaacttcctggccacagtgactgtatgcttgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatttttttttatcttgttcctgttgaacttcctggccacagtgactgtatgcttgact 380

                                                                       
Query: 181 cttgaactagataacatgatctcagaaatatgctctttgggaactgcagagagtccagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgaactagataacatgatctcagaaatatgctctttgggaactgcagagagtccagac 440

                                                                       
Query: 241 ttgaaggatcagcacagtcccttgcgaacatgttccaagcatccagctgttaccactgca 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaaggatcagcatagtcccttgcgaacatgttccaagcatccagctgttaccactgca 500

                                                                       
Query: 301 atgagctggtgcttccgcactgggaagtacagggttccagtgccagaagcgttggtaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgagctggtgcttccgcactgggaagtacagggttccagtgccagaagcgttggtaaaa 560

                                                                       
Query: 361 tgcttgttcccgaactttagagcagataaagaaaaaacagttttggggaagtgatggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcttgttcccgaactttagagcagataaagaaaaaacagttttggggaagtgatggtga 620

                                                                       
Query: 421 gcatggggaacatactttcacagtgatgaggccacagcgaatttctaggagacaagctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatggggaacatactttcacagtgatgaggccacagcgaatttctaggagacaagctgt 680

                                                                     
Query: 481 cacttaggtatgatcagagctcttttcccaaatacgttctctcatggcaactacttgg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacttaggtatgatcagagctcttttcccaaatacgttctctcatggcaactacttgg 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)