BAC Information

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BAC

Clone NameMSMg01-394A24
Chromosome15 (Build37)
Map Location 20,390,109 - 20,390,516
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394A24.T7 (MSMg01no394_a24.b1)MSMg01-394A24.TJ (MSMg01no394_a24.g1)
ACCAG495208AG495209
length809787
length of high quality
(start - end)		412 (50 - 461)384 (80 - 463)
definitionCHROMAT_FILE: MSMg01no394_a24.b1 PHD_FILE: MSMg01no394_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:18 2005CHROMAT_FILE: MSMg01no394_a24.g1 PHD_FILE: MSMg01no394_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAGAAAACTAAACTGAAAAATTATTGCATTTTGCTTTCCA
GTCACAAAGCTATGATTAATAGCTTTAACTGAGAGCAAAGATATTTTCAT
TAGTGGTTACTTAACCAGTTTTTGTAAATGGATATACTTCTCTATTCTTT
CATGCTGAAAAAACTTTCAAACTTTATATATATAGGATGATAATTTTAGG
ATAAAGTTCTAAAATTACCTTTAAAAACAACCCAACCCAACCCAAACAAA
CAAAACCAGGACTTTCCCTAGGAAAGGCATCTGCTTTCACCTGATAAGCT
GTCTCCTGAGAGACTTTGCCAGAGTCTGACAAATACAGAGTCAGATGTTT
GCAGGCAACCATTGGACTGAGCACAGGTTCCCCAATGGAGGAGTTAGAGA
AAGGAATGAAGGAAATGAAGGGGCCTTCTTTTCCCCCTTCCTTTCTTCCC
CCCCTCCCCTTCCTTTTCGTTTCACTCCTTCCCCTTTCTCTCTCCTACCT
TTTTCTCTCCTTTTCCCTTTCTCTCCTTTTTTTCCCCCCTCCCCACTCTT
CTTTTCCACTCCTTTCCCCCTCCTTCGCCCTTTCTTTATTAACTTCCTCC
TTCATCCCTTCTCCTTCCTTCTCCCTTTCCTTTCTATCTTCCGTTTCTCC
TTCCACCCTCCCCCCTTTTTCTCCGCCTCCCCTCTTTTCCCTTTTCCCCC
CATCCCTTTTTTCCCTCCCCTTCCTTTACCCTCACTTTTTCTCCCCCATA
TTTCATTCC

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCTGAGAAGCACCTGAAAAAATGCTCAGCATCCTTAATCATCAGAGAAAT
GCAAATGAAAACACCTCTGAGATTCCATCTCATACCATTCAGAATGGCTA
AGACCAAAAATTCAGGTGACAGCAGATGCGGGTGAGGATGTGGAAAAAGA
GGAACACTCCTTCATTGTTGGTGGAATTGCAAGCTTGTACAACCACTCTA
GAAATCGGTCTAGCCAGAAAATTGGACATAGTACTACAGGAGGATCCCAC
AATACCCCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAATAACCCAGATGTCCCTCAACAGAGGAATGGAGAAAAAAAATATG
GGACATTTTACCAATGGAGTACTACTCCTCTTTTTAAAAAAATGGGTTTT
TGATATTCCAACCCAAGGAGGGACCCGGAGGCACCCCCCTGGGCGGAGGC
AACCCTTCCCCCTTCTACTCCCTGGGCATGGTTTCTTTGACCAACGGAAA
TCACCCCTCAAATTCCCCCTCTTTTATCTTTTCCTTAACACTTGCCCTAT
TTGCGTTTTTCTCACATTGACACCCACCAGTCGGTTCAGTTGCCCCCTCT
TCTTTAAGTATTATCTCCCACTCTGCTCCTTTTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_a24.b1 MSMg01no394_a24.b1 CHROMAT_FILE:
MSMg01no394_a24.b1 PHD_FILE: MSMg01no394_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:18 2005
         (412 letters)



>mm_chr15_20389905_20390716
          Length = 812

 Score =  781 bits (404), Expect = 0.0
 Identities = 407/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagaaaactaaactgaaaaattattgcattttgctttccagtcacaaagctat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagaaaactaaactgaaaaattattgcattttgctttccagtcacaaagctat 264

                                                                       
Query: 65  gattaatagctttaactgagagcaaagatattttcattagtggttacttaaccagttttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattaatagctttaactgagagcaaagatattttcattagtggttacttaaccagttttt 324

                                                                       
Query: 125 gtaaatggatatacttctctattctttcatgctgaaaaaactttcaaactttatatatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtaaatggatatacttctctattctttcatgctgaaaaaactttcaaactttatatatat 384

                                                                       
Query: 185 aggatgataattttaggataaagttctaaaattacctttaaaaacaacccaacccaaccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggatgataattttaggataaagttctaaaattacctttaaaaacaacccaacccaaccc 444

                                                                       
Query: 245 aaacaaacaaaaccaggactttccctaggaaaggcatctgctttcacctgataagctgtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacaaacaaaaccaggactttccctaggaaaggcatctgctttcacctgataagctgtc 504

                                                                       
Query: 305 tcctgagagactttgccagagtctgacaaatacagagtcagatgtttgcaggcaaccatt 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcctgagagactctgccagagtctgacaaatacagagtcagatgtttgcaggcaaccatt 564

                                                           
Query: 365 ggactgagcacaggttccccaatggaggagttagagaaaggaatgaag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggactgagcacaggttccccaatggaggagttagagaaaggaatgaag 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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